DiScRIBinATE statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Homology-Based Taxonomic chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Protocols

To access compelling stats and trends, optimize your time and resources and pinpoint new correlations, you will need to subscribe to our premium service.

Subscribe

DiScRIBinATE specifications

Information


Unique identifier OMICS_01453
Name DiScRIBinATE
Alternative name Distance Score Ratio for Improved Binning And Taxonomic Estimation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

Versioning


Add your version

Maintainer


This tool is not available anymore.

Publication for Distance Score Ratio for Improved Binning And Taxonomic Estimation

DiScRIBinATE in pipelines

 (2)
2016
PMCID: 4858888
PMID: 27158266
DOI: 10.1186/s13099-016-0099-z

[…] bacterial/archaeal genomes []. blastn output thus obtained was filtered (hits with percentage identity >65 and e value <10e−10 were retained). filtered results were provided as input to the discribinate method [] for obtaining the final taxonomic assignment of the metagenomic contigs (constituting each dataset)., the abundance profile of various bacterial groups (at genera level) […]

2016
PMCID: 5047465
PMID: 27695034
DOI: 10.1371/journal.pone.0163099

[…] to ensure that such biases were not present in the datasets in the current study, taxonomic classification of the contigs in each of the samples (in each dataset) were first obtained using discribinate []. the taxonomic profiles of each sample (in the different datasets) were then compared by pca using stamp []. it was observed that the samples from different datasets clustered […]


To access a full list of citations, you will need to upgrade to our premium service.

DiScRIBinATE in publications

 (3)
PMCID: 5047465
PMID: 27695034
DOI: 10.1371/journal.pone.0163099

[…] enzymes. for this purpose, for each metagenome, the taxa affiliations of all contigs, identified to harbor xenobiotic metabolizing enzymes (using the blast search), were first obtained using the discribinate method []. this method, along with a few other methods [–], utilizes blast alignment parameter based thresholds for the accurate taxonomic affiliation of metagenomic sequences/contigs. […]

PMCID: 4634789
PMID: 26537885
DOI: 10.1186/s12859-015-0788-5

[…] reads, and the paired-end version is presented; metaphyler [] can use blastx, blastn, or a combination of the results, and the results for the blastx/blastn combination are presented; megan4 and discribinate [] have the option of taking results as input from either rapsearch2 [] or blastx, and the rapsearch2 versions are presented. rapsearch2 is an alternative to blast, which we found to run […]

PMCID: 3999041
PMID: 24763225
DOI: 10.1371/journal.pone.0095547

[…] this database (with thresholds of identity greater than 65%, query coverage >70% and minimum alignment length >75 base pairs). subsequently, the reads were taxonomically classified using discribinate . discribinate is a similarity-based taxonomic classification method that uses a two-step approach. based on the alignment parameters (between a hit and its corresponding blast hit), […]


To access a full list of publications, you will need to upgrade to our premium service.

DiScRIBinATE institution(s)
Bio-Sciences Division, Innovation Labs, Tata Consultancy Services, Hyderabad, Andhra Pradesh, India

DiScRIBinATE reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DiScRIBinATE