dismo statistics

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dismo specifications

Information


Unique identifier OMICS_28004
Name dismo
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1-4
Stability Stable
Requirements
methods, R(≥3.2.0), ROCR, XML, randomforest, rgeos, jsonlite, kernlab, rgdal, maptools, raster(≥2.5-2), sp(≥1.2-0), rJava(≥0.9-7), deldir, gstat, gbm(≥2.1.1)
Source code URL https://cran.r-project.org/src/contrib/dismo_1.1-4.tar.gz
Maintained Yes

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Documentation


Maintainer


  • person_outline Robert Hijmans <>

dismo in publications

 (147)
PMCID: 5930794
PMID: 29565748
DOI: 10.1089/vbz.2017.2234

[…] site, leaving 17 points in the evaluation dataset. this process was repeated 15 times, reporting the mean and standard error of the evaluation metrics. model evaluation was performed using the dismo (hijmans et al. ) package in r, which provides tools to calculate binary classification statistics such as sensitivity and auc given a maxent model and presence/absence data., the best fit […]

PMCID: 5901863
PMID: 29659568
DOI: 10.1371/journal.pone.0188384

[…] spatial filter to presence data reduces overfitting; therefore, we applied a 10 arc-minute (~12 km2) spatial filter by randomly choosing one bd occurrence site from every 10 arc-minute area using r (dismo [] and maptools [] packages). this resulted in 746 bd-positive sites with environmental data for model training. we further minimized sampling bias by restricting background sampling areas […]

PMCID: 5896943
PMID: 29649261
DOI: 10.1371/journal.pone.0195221

[…] used to predict potential abundance throughout the entire area of pamlico sound covered by ncdmf surveys []. to accomplish this, the function gbm.auto was used to automate several functions of the dismo and gbm packages in r [,]., prior to brt analysis, temperature, salinity, dissolved oxygen, sav distance, and inlet distance measurements at ncdmf gillnet and longline stations […]

PMCID: 5859420
PMID: 29554980
DOI: 10.1186/s13071-018-2776-x

[…] all analyses were conducted in the r environment [], with the exception of the computation of the distance rasters, which, as described above, was conducted using qgis. the maxent function in the dismo package (v. 0.9–3) was used to fit the models [, ]., the geographical distribution of australian rrv epidemics, as reported by the promed electronic surveillance system of the isid between 1 […]

PMCID: 5851582
PMID: 29538392
DOI: 10.1371/journal.pone.0193230

[…] maps with the survey points values for each indicator using the same color ramp scale for the legend to enable visual comparison. the spatial predictions were performed in the r software using the dismo and raster packages [,,]., once calibrated for each site, we used this framework to identify priority areas on land where management actions that reduce or limit additional nutrient inputs […]


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