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chevron_left Peptide binding site prediction Disorder prediction chevron_right
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DISOPRED specifications

Information


Unique identifier OMICS_03618
Name DISOPRED
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DISOPRED

DISOPRED in publications

 (27)
PMCID: 5942847
PMID: 29702646
DOI: 10.1371/journal.pntd.0006459

[…] split into two domains, comprising an n-terminal ordered (or folded) domain (csost-n; met1 to arg354; 354 aa) and c-terminal disordered (or unfolded) domain (csost-c; arg355–leu480; 126 aa) using disopred3 []. to build a molecular model, a short fragment (met1–leu23) was removed, and the remainder of csost-n and csost-c were used for accurate model prediction. initial three-dimensional (3d) […]

PMCID: 5847340
PMID: 29424691
DOI: 10.7554/eLife.31486.045

[…] against folded proteins, we do not see a systematic increase in the scores of all disordered human proteins. comparison against a top performing sequence homology-based disorder predictor (disopred3, []) and a physics-based disorder predictor (iupred-long []) shows that disorder predictors are better at discriminating disordered proteins from the pdb and the human proteome, […]

PMCID: 5751360
PMID: 29257115
DOI: 10.3390/ijms18122761

[…] functional disordered domains [,,]. we predicted the dpb regions with the disordpbind method [,]. disordpbind was recently shown to outperform other similar methods [], such as morfpred [], disopred3 [] and anchor []. it is also sufficiently runtime-efficient to process our large dataset. as with all idprs, we eliminated putative dpb regions that are shorter than four consecutive […]

PMCID: 5746249
PMID: 29240760
DOI: 10.1371/journal.pcbi.1005885

[…] we gathered various predicted features of the pssm-identified peptides. the methods we used included pfam annotations [], average disorder prediction scores (using iupred, pondr vsl2, espritz and disopred3) [–], average score to be part of disordered binding regions (using anchor, morf-chibi and disopred3-br) [–], and secondary structure prediction scores using psipred []. at the protein […]

PMCID: 5648111
PMID: 29049306
DOI: 10.1371/journal.pone.0185790

[…] sequences (2). the former approach is prone to errors in the solved protein structures deposited in protein data bank (http://www.rcsb.org/) []. we therefore opted to use several methods, iupred [], disopred3 [], pondr vl-xt [] and pondr vsl2 [], to predict differences in the intrinsic disorder regions between ccr5 and cxcr4 using virus in our datasets, namely r5, r5x4 and x4 envelope […]


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DISOPRED institution(s)
Bioinformatics Group, Department of Computer Science, University College London, Gower Street, London, UK

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