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dissectHMMER specifications

Information


Unique identifier OMICS_14477
Name dissectHMMER
Interface Web user interface
Restrictions to use None
Input data FASTA sequence
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Wing-Cheong Wong

Publications for dissectHMMER

dissectHMMER citation

library_books

xHMMER3x2: Utilizing HMMER3’s speed and HMMER2’s sensitivity and specificity in the glocal alignment mode for improved large scale protein domain annotation

2016
Biol Direct
PMCID: 5126834
PMID: 27894340
DOI: 10.1186/s13062-016-0163-0

[…] ts can be stratified into paired HMMER2/HMMER3 hits, HMMER2-only hits and HMMER3-only hits. More specifically, the paired hits are HMMER2 and HMMER3 hits where the domain model sequences overlap (see dissectHMMER for details [, ]). The orphaned HMMER2 and HMMER3 hits are those that are found only by the HMMER variant itself. For the paired HMMER2/HMMER3 hits, each glocal-mode HMMER2 hit is reconst […]


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dissectHMMER institution(s)
Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Matrix, Singapore, Singapore; School of Biological Sciences (SBS), Nanyang Technological University (NTU), Singapore, Singapore; Department of Biological Sciences (DBS), National University of Singapore (NUS), Singapore, Singapore; School of Computer Engineering (SCE), Nanyang Technological University (NTU), Singapore, Singapore
dissectHMMER funding source(s)
This work was supported by A*STAR Singapore, the grants “A*STAR-NKTH JGC 007”, “SERC IMaGIN”, and “IAF CAT3 Integrated Genomics Platform”.

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