DistAMo specifications

Information


Unique identifier OMICS_21881
Name DistAMo
Alternative name Distribution Analysis of DNA Motifs
Interface Web user interface
Restrictions to use None
Input data An annotated genome information in fasta and a gff format together with a motif of interest.
Input format FASTA+GFF
Computer skills Basic
Stability Stable
Source code URL https://www.computational.bio.uni-giessen.de/distamo/assets/DistAMo.zip
Maintained Yes

Maintainer


  • person_outline Torsten Waldminghaus <>

Additional information


https://www.computational.bio.uni-giessen.de/distamo/manual

Information


Unique identifier OMICS_21881
Name DistAMo
Alternative name Distribution Analysis of DNA Motifs
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An annotated genome information in fasta and a gff format together with a motif of interest.
Input format FASTA+GFF
Output data A list of z-scores describing the over or under-representation for each coding sequence, a color-coded graph in a set of circles with different moving window sizes to allow visual inspection of the genomic motif distribution.
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Torsten Waldminghaus <>

Additional information


https://www.computational.bio.uni-giessen.de/distamo/manual

Publication for Distribution Analysis of DNA Motifs

DistAMo institution(s)
Chromosome Biology Group, LOEWE Center for Synthetic Microbiology, SYNMIKRO, Philipps-University Marburg, Marburg, Germany; Bioinformatics and Systems Biology, Faculty of Biology and Chemistry, Justus-Liebig-University, Giessen, Germany
DistAMo funding source(s)
Supported within the LOEWE program of the State of Hesse and; by the BMBF grant FKZ 031A533 within the de.NBI network.

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