DB2 specifications

Unique identifier:
OMICS_14829
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM
Output format:
BAM
Programming languages:
Java
Stability:
Stable
Maintained:
Yes
Name:
Distribution Based detection of Duplication Boundaries
Interface:
Command line interface
Input data:
The mapping of the paired-end read sequences to the reference genome.
Output data:
The resulting BAM files with orientation information as well as the mapping coordinates for each read pair.
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Picard SAM-JDK

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DB2 distribution

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DB2 support

Maintainer

  • Thomas LaFramboise <>

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Publications

Institution(s)

Department of Epidemiology & Biostatistics, Case Western Reserve University, Cleveland, OH, USA; Department of Electrical Engineering & Computer Science, Case Western Reserve University, Cleveland, OH, USA; Department of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH, USA; Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA; Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA

Funding source(s)

This work was supported by the National Cancer Institute of the National Institutes of Health under Awards R25-CA094186, R01-CA131341, the National Science Foundation under Award IIS-0916102, and the American Cancer Society under award 123436-RSG-12-159-01-DMC.

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