DISTRUCT pipeline

DISTRUCT specifications

Information


Unique identifier OMICS_12221
Name DISTRUCT
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The data to be plotted are specified in ASCII text-formatted files derived from structure output.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Noah A. Rosenberg <>

Publication for DISTRUCT

DISTRUCT citations

 (7)
2018
PMCID: 5801307

[…] and δk ad hoc statistics (evanno et al., 2005) by structure harvester v.0.6.7 (earl and vonholdt, 2012). graphs representing the membership coefficient of each sampled individual were plotted using distruct 1.1 (rosenberg, 2004). genetic differentiation estimates were assessed from pairwise φst values obtained in arlequin v.3.5.1.3 (excoffier and lischer, 2010). significant estimates were based […]

2017
PMCID: 5376269

[…] there are four genetically distinct sweet cherry subgroups within two larger groups (fig. 5). in both cases, ‘bing’ segregated into its own group and subgroup. the final graphics files produced by distruct can be seen in fig. 3, combined with the dendrogram produced by ntsys (fig. 6)., while wgs enables the largest coverage of the genome, sequencing of random regions reduces the comparable […]

2015
PMCID: 4423885

[…] model parameters of admixture with correlated allele frequencies. the most probable k was derived by applying the delta k method [55]. structure results were displayed using bar plots prepared with distruct software version 1.1 [56]. multi-locus haplotypes were reconstructed from the predominant allele at each locus in isolates with no missing data. multi-locus linkage disequilibrium (ld) […]

2015
PMCID: 4528315

[…] than five replicates were performed. a burn-in period of 100,000 iterations followed by a run length of 100,000 iterations, the admixture model, and the correlated allele frequencies model were set. distruct program was used to graphically display the results (rosenberg 2004)., when aligning the nucleotide sequences of the z1c1 region, a cluster of the 22-kd zein storage protein genes on maize […]

2011
PMCID: 3087725

[…] population, and burn-in period of 20,000 iterations followed by 10,000 markov chain monte carlo replications. graphical displays of results of population structure were produced using the program distruct [35]., to compare ld structure and organization of haplotypes harboring published disease loci or loci that alter drug metabolism we carried out analyses of obesity-related (viz, fat mass […]

DISTRUCT institution(s)
Program in Molecular and Computational Biology, University of Southern California, Los Angeles, CA, USA

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