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DISULFIND specifications

Information


Unique identifier OMICS_04214
Name DISULFIND
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DISULFIND

DISULFIND in pipelines

 (2)
2018
PMCID: 5764898
PMID: 29327267
DOI: 10.1186/s13568-017-0533-8

[…] (petersen et al. ) and sopma secondary structure prediction (https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=/npsa/npsa_sopma.html) (combet et al. ), respectively. the online software disulfind (http://disulfind.dsi.unifi.it/) was used to predict cysteine disulfide bonding state and connectivity of the putative protein. and the tertiary structure of bdpho was predicted by online […]

2017
PMCID: 5382200
PMID: 28428776
DOI: 10.3389/fmicb.2017.00592

[…] and figure ). the antiparallel β-strands create two packed β-sheets and the six conserved cysteine residues form three disulfide bridges. the most probable disulfide bond pattern predicted by the disulfind software is “abcabc,” between cysteines 7 and 35; 14 and 42; and 27 and 53 (see also figure ), which also corresponds to the disulfide bond pattern determined in paf ()., to identify […]


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DISULFIND in publications

 (43)
PMCID: 5871713
PMID: 29618982
DOI: 10.3389/fphys.2018.00252

[…] were calculated using the sias tool (http://imed.med.ucm.es/tools/sias.html). sequence logos of the aligned r. ferrugineus obp orthologs were created using weblogo 3.1 (crooks et al., ). the disulfind web server tool (http://disulfind.dsi.unifi.it) was used to predict the distribution of disulfide bonds. compute pi/mw (http://web.expasy.org/compute_pi/) was used to predict […]

PMCID: 5764898
PMID: 29327267
DOI: 10.1186/s13568-017-0533-8

[…] (petersen et al. ) and sopma secondary structure prediction (https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=/npsa/npsa_sopma.html) (combet et al. ), respectively. the online software disulfind (http://disulfind.dsi.unifi.it/) was used to predict cysteine disulfide bonding state and connectivity of the putative protein. and the tertiary structure of bdpho was predicted by online […]

PMCID: 5548967
PMID: 28415833
DOI: 10.18869/acadpub.ibj.21.5.342

[…] the cdna encoding odontobuthus doriae chlorotoxin was isolated from the library, and its putative peptide was characterized by some bioinformatics software such as protein blast, signalp4.0, disulfind and clustal omega., the mature odontobuthus doriae chlorotoxin peptide has a 35-amino-acid residue and four disulfide bounds. this putative chlorotoxin is a small, compact, and stable […]

PMCID: 5507557
PMID: 28704525
DOI: 10.1371/journal.ppat.1006447

[…] for at least 10 times each, to attain reasonably well equilibrated structures using the yasara server (www.yasara.org)., the prediction of disulfide bonds in our homology models were performed using disulfind (http://disulfind.dsi.unifi.it) [–]. our analysis showed high probability of disulfide bond formation by this cys351 residue. confirming that c351 is a potential residue for forming […]

PMCID: 5434006
PMID: 28512317
DOI: 10.1038/s41598-017-02234-w

[…] pattern of proteins were calculated and predicted by expasy protparam tool, protein calculator v3.4 server (the scripps research institute; http://www.scripps.edu/~cdputnam/protcalc.html), and disulfind cysteines disulfide bonding state and connectivity predictor server, respectively. the experimentally determined nfap-related a. giganteus antifungal protein tertiary structure (protein […]


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DISULFIND institution(s)
Machine Learning and Neural Networks Group, Università degli Studi di Firenze, Dipartimento di Sistemi e Informatica, Firenze, Italy

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