DisVis protocols

View DisVis computational protocol

DisVis statistics

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DisVis specifications

Information


Unique identifier OMICS_10292
Name DisVis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Parallelization CUDA
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Requirements
Numpy, C-compiler
Maintained Yes

Versioning


Version Operating System DOI Size Download Info
2.0
32/64 bits
10.5281/zenodo.1037197 4.56 Mo get_app

Documentation


Maintainers


Additional information


http://milou.science.uu.nl/cgi/services/DISVIS/disvis/help

Information


Unique identifier OMICS_10292
Name DisVis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


Additional information


http://milou.science.uu.nl/cgi/services/DISVIS/disvis/help

Publications for DisVis

DisVis in pipeline

2017
PMCID: 5795388
PMID: 29222160
DOI: 10.1074/mcp.RA117.000470

[…] (pdb code 5lnk), which were structurally aligned in pymol to generate a more complete ci-ciii2-civ supercomplex model. this model was also used to calculate alternative interaction spaces with the disvis web server (), assuming a maximum cross-linked cα–cα distance of 30 å., interaction networks were generated using cytoscape v3.4 () and xinet ()., blue native page sample and gel running […]


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DisVis in publications

 (2)
PMCID: 5847541
PMID: 29531219
DOI: 10.1038/s41467-018-03484-6

[…] made up by the wd40 domain of csa suggests that these regions are important for the interaction with tric (supplementary fig. ). given these inter-protein linkages as distance restraints, we used disvis to identify the accessible interaction space for csa on the tric surface (fig. ). our data indicate that the only available interaction space for csa that is consistent with our cross-linking […]

PMCID: 5795388
PMID: 29222160
DOI: 10.1074/mcp.RA117.000470

[…] (pdb code 5lnk), which were structurally aligned in pymol to generate a more complete ci-ciii2-civ supercomplex model. this model was also used to calculate alternative interaction spaces with the disvis web server (), assuming a maximum cross-linked cα–cα distance of 30 å., interaction networks were generated using cytoscape v3.4 () and xinet ()., blue native page sample and gel running […]


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DisVis institution(s)
Bijvoet Center for Biomolecular Research, Faculty of Science–Chemistry, Utrecht University, Utrecht, The Netherlands; LIP-Laboratório de Instrumentação e Física Experimental de Particulãs, Avenida Lisbon, Portugal; Istituto Nazionale di Fisica Nucleare-Sezione di Padova, Padova, Italy; Magnetic Resonance Center and Department of Chemistry “Ugo Schiff”, University of Florence, Sesto, Fiorentino, Italy
DisVis funding source(s)
Supported by grants from the Netherlands Organization for Scientific Research (NWO; ECHO grant no. 711.011.009) and by European H2020 eInfrastructure grants (EGI-Engage, grant no. 654142; INDIGO-DataCloud, grant no. 653549; West-Life grant no. 675858; and BioExcel grant no. 675728).

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