Diversitree protocols

Diversitree specifications


Unique identifier OMICS_12496
Name Diversitree
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 0.9-8
Stability Stable
Requirements methods, ape
Source code URL https://cran.r-project.org/src/contrib/diversitree_0.9-10.tar.gz
Maintained Yes


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  • person_outline Richard G. FitzJohn <>

Publication for Diversitree

Diversitree IN pipeline

PMCID: 4366372
PMID: 25526369
DOI: 10.1038/ismej.2014.242

[…] 70% identity over greater than 80% to the translated nucleotide sequence of the genome in question. the distribution of the genes across the e. coli core-genome dendrogram was visualized using the diversitree package (fitzjohn, 2012) implemented in r (r development core team, 2012)., for statistical analysis to take account of genes incorrectly labelled as ‘absent' because of the splitting […]

Diversitree institution(s)
Department of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver, Canada
Diversitree funding source(s)
This work was supported by a University Graduate Fellowship from the University of British Columbia and a Vanier Commonwealth Graduate Scholarship from NSERC, and an NSERC discovery grant.

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