DiversitySeq specifications

Information


Unique identifier OMICS_32247
Name DiversitySeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Barbara Di Camillo
  • person_outline Francesca Finotello

Publication for DiversitySeq

DiversitySeq citation

library_books

Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study

2018
Front Microbiol
PMCID: 5844980
PMID: 29556222
DOI: 10.3389/fmicb.2018.00317

[…] ber of species and Chao1 index (); sample evenness was explored using Simpson and Inverse Simpson indices; overall sample diversity was explored using the Shannon index using the aindex function from DiversitySeq package (). The overall difference in the alpha diversity of the samples between V, VG, and O were tested using ANOVA and pairwise comparisons were computed using Tukey’s Honest Significa […]

DiversitySeq institution(s)
Division of Bioinformatics, Biocenter, Medical University of Innsbruck, Austria; Department of Food Safety, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy; Bioengineering at the Department of Information Engineering, University of Padova, Italy
DiversitySeq funding source(s)
Supported by PRAT 2010, grant number CPDA101217.

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