DMRcate protocols

DMRcate specifications

Information


Unique identifier OMICS_06801
Name DMRcate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.4.2
Stability Stable
Requirements limma, minfi, DMRcatedata
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Timothy J. Peters <>

Publication for DMRcate

DMRcate IN pipeline

2017
PMCID: 5428306
PMID: 28325913
DOI: 10.1038/s41598-017-00384-5

[…] package, version 3.2.3 (www.r-project.org/)., we examined the association of prenatal mercury exposure with differentially methylated regions (dmrs) in cord blood using the r bioconductor package dmrcate69. this regional analysis method was chosen over other available methods because it has an agnostic approach to both genomic annotation and direction of effect estimates. briefly, […]

DMRcate institution(s)
CSIRO Digital Productivity Flagship, Riverside Life Sciences Centre, North Ryde, New South Wales, Australia; Epigenetics Program, Garvan Institute of Medical Research, Sydney, Australia; St Vincent’s Hospital, Darlinghurst, New South Wales, Australia; School of Medicine, University of Notre Dame, Darlinghurst, New South Wales, Australia; St Vincent’s Clinical School, Faculty of Medicine, University of New South Wales, Darlinghurst, New South Wales, Australia; CSIRO Food and Nutrition Flagship, Riverside Life Sciences Centre, Sydney, Australia

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