DMRforPairs specifications


Unique identifier OMICS_04059
Name DMRforPairs
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.17.0
Stability Stable
parallel, R(>=2.15.2), Gviz(>=1.2.1), R2HTML(>=2.2.1), GenomicRanges(>=1.10.7)
Maintained Yes


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Publication for DMRforPairs

DMRforPairs in publications

PMCID: 4479500
PMID: 25859847
DOI: 10.1371/journal.pone.0122146

[…] were compared to tumor samples in the evaluation of specific regions of interest in the tumor samples and with regard to their global methylation profile. moreover, they were analyzed using the dmrforpairs package to identify specific dmr in these unique samples ([], using the default settings except min_dm = 0.9, see above). for the nccit and tcam-2 cell lines this analysis matches the one […]

PMCID: 4041891
PMID: 24887064
DOI: 10.1371/journal.pone.0098330

[…] . all raw and processed data files are submitted as a geo superseries and accessible via gse56454 ( differentially methylated regions were identified using the dmrforpairs algorithm using the default settings . dmrforpairs is available via bioconductor: ( briefly, dmrforpairs defines […]

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DMRforPairs institution(s)
Department of Pathology, Laboratory for Experimental Patho-Oncology, Erasmus MC - University Medical Center Rotterdam, Rotterdam, Netherlands

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