DMRforPairs specifications

Information


Unique identifier OMICS_04059
Name DMRforPairs
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.17.0
Stability Stable
Requirements
parallel, R(>=2.15.2), Gviz(>=1.2.1), R2HTML(>=2.2.1), GenomicRanges(>=1.10.7)
Maintained Yes

Versioning


Add your version

Documentation


Publication for DMRforPairs

DMRforPairs in publications

 (2)
PMCID: 4479500
PMID: 25859847
DOI: 10.1371/journal.pone.0122146

[…] were compared to tumor samples in the evaluation of specific regions of interest in the tumor samples and with regard to their global methylation profile. moreover, they were analyzed using the dmrforpairs package to identify specific dmr in these unique samples ([], using the default settings except min_dm = 0.9, see above). for the nccit and tcam-2 cell lines this analysis matches the one […]

PMCID: 4041891
PMID: 24887064
DOI: 10.1371/journal.pone.0098330

[…] . all raw and processed data files are submitted as a geo superseries and accessible via gse56454 (http://www.ncbi.nlm.nih.gov/geo/). differentially methylated regions were identified using the dmrforpairs algorithm using the default settings . dmrforpairs is available via bioconductor: (http://www.bioconductor.org/packages/release/bioc/html/dmrforpairs.html). briefly, dmrforpairs defines […]


To access a full list of publications, you will need to upgrade to our premium service.

DMRforPairs institution(s)
Department of Pathology, Laboratory for Experimental Patho-Oncology, Erasmus MC - University Medical Center Rotterdam, Rotterdam, Netherlands

DMRforPairs reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DMRforPairs