DMRMark specifications

Information


Unique identifier OMICS_19819
Name DMRMark
Alternative name DMR detection based on non-homogeneous hidden Markov model
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An M-values matrix.
Output data A list of matched normal p-values.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.1.1
Stability Stable
Requirements MCMpack, mvtnorm, ellipse
Source code URL https://cran.r-project.org/src/contrib/DMRMark_1.1.1.tar.gz
Maintained Yes

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Documentation


Maintainers


  • person_outline Xiaodan Fan <>
  • person_outline Linghao SHEN <>

Publication for DMR detection based on non-homogeneous hidden Markov model

DMRMark institution(s)
Department of Information Engineering, The Chinese University of Hong Kong, Hong Kong; Department of Genetics and Genomic Sciences, Mount Sinai School of Medicine, New York University, New York, NY, USA; University of Electronic Science and Technology of China, Sichuan, China; Department of Statistics, The Chinese University of Hong Kong, Hong Kong
DMRMark funding source(s)
Partially supported by three grants from the Research Grants Council of the Hong Kong SAR, China (CUHK400913, CUHK14203915, T12-710/16-R) and two CUHK direct grants (CUHK4053135, CUHK3132753).

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