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DNA Baser Sequence Assembler specifications

Information


Unique identifier OMICS_02139
Name DNA Baser Sequence Assembler
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Biological technology Roche
Operating system Unix/Linux, Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline D Baser Sequence Assembler Team

DNA Baser Sequence Assembler citations

 (13)
library_books

Phylogenetic Analysis and Antimicrobial Profiles of Cultured Emerging Opportunistic Pathogens (Phyla Actinobacteria and Proteobacteria) Identified in Hot Springs

2017
PMCID: 5615607
PMID: 28914802
DOI: 10.3390/ijerph14091070

[…] sburg. If primer 8F failed, only partial sequencing was obtained. A contiguous sequence was constructed with forward and reverse sequencing data resulting in a fragment of approximately 1400 bp, with DNA Baser Sequence Assembler v4 (2013) (Heracle BioSoft, Arges, Romania).Sequences were compared with those in the NCBI database (GenBank) using the BLAST Sequence Analysis Tool [], and EzTaxon-e []. […]

call_split

Susceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection

2017
BMC Evol Biol
PMCID: 5297017
PMID: 28173748
DOI: 10.1186/s12862-017-0897-z
call_split See protocol

[…] ectly sequenced on both strands with a Big Dye Terminator sequencing Kit (v3.1 Thermo Fisher Scientific), and run on an Applied Biosystems ABI 3130 XL Genetic Analyzer. Sequences were assembled using DNA Baser Sequence Assembler version 4.10. A summary of all variants identified through resequencing is available (Fig.¬†, Table¬†, Additional file : Table S6 and S7).Genetic association was investigate […]

call_split

Conflict of mitochondrial phylogeny and morphology based classification in a pair of freshwater gastropods (Caenogastropoda, Truncatelloidea, Tateidae) from New Caledonia

2016
Zookeys
PMCID: 4977999
PMID: 27551195
DOI: 10.3897/zookeys.603.9144
call_split See protocol

[…] COI sequences were edited using the software DNA BASER v. 4.16 (DNA Baser Sequence Assembler v. 4.16 2014). After addition of two outgroup sequences of Hemistomia nyo and Hemistomia andreae (see ; ), the alignment was generated with Clustal W implemented in MEGA v […]

call_split

Serotype and genetic diversity of human rhinovirus strains that circulated in Kenya in 2008

2016
Influenza Other Respir Viruses
PMCID: 4814864
PMID: 26822469
DOI: 10.1111/irv.12373
call_split See protocol

[…] Consensus contig assembly of the newly determined nucleotide sequences was performed using dna baser sequence assembler V.4 (2013) (Heracle BioSoft, www.DnaBaser.com) and thereafter edited using BioEdit sequence alignment editor. Multiple sequence alignment was performed using muscle softwa […]

call_split

Species delimitation in northern European water scavenger beetles of the genus Hydrobius (Coleoptera, Hydrophilidae)

2016
Zookeys
PMCID: 4820092
PMID: 27081333
DOI: 10.3897/zookeys.564.6558
call_split See protocol

[…] Editing and alignment of sequences DNA Baser Sequence Assembler v4.10.1.13 (2012, Heracle BioSoft SRL, http://www.DnaBaser.com) was used to assemble and edit DNA sequences. The forward and reverse sequences were automatically assembled […]

library_books

Assessing Bacterial Diversity in the Rhizosphere of Thymus zygis Growing in the Sierra Nevada National Park (Spain) through Culture Dependent and Independent Approaches

2016
PLoS One
PMCID: 4711807
PMID: 26741495
DOI: 10.1371/journal.pone.0146558

[…] 16S rRNA gene clone library were analyzed systematically. Nucleotide sequences were manually checked, forward and reverse complementary sequences were assembled and trimmed of vector sequences using DNA Baser Sequence Assembler software (Heracle BioSoft S.R.L., Pitesti, Romania). Chimera sequences were detected and further removed by the web-based version of the USEARCH 6.0 chimera detection tool […]

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DNA Baser Sequence Assembler institution(s)
Heracle BioSoft S.R.L.

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