DNA Baser Sequence Assembler protocols

DNA Baser Sequence Assembler specifications

Information


Unique identifier OMICS_02139
Name DNA Baser Sequence Assembler
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Biological technology Roche
Operating system Unix/Linux, Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline D Baser Sequence Assembler Team <>

DNA Baser Sequence Assembler IN pipelines

 (3)
2017
PMCID: 5615607
PMID: 28914802
DOI: 10.3390/ijerph14091070

[…] if primer 8f failed, only partial sequencing was obtained. a contiguous sequence was constructed with forward and reverse sequencing data resulting in a fragment of approximately 1400 bp, with dna baser sequence assembler v4 (2013) (heracle biosoft, arges, romania)., sequences were compared with those in the ncbi database (genbank) using the blast sequence analysis tool [49], and eztaxon-e […]

2016
PMCID: 4814864
PMID: 26822469
DOI: 10.1111/irv.12373

[…] strains described in this study were submitted to genbank under the accession numbers: kr059989–kr060014., consensus contig assembly of the newly determined nucleotide sequences was performed using dna baser sequence assembler v.4 (2013) (heracle biosoft, www.dnabaser.com) and thereafter edited using bioedit sequence alignment editor.15 multiple sequence alignment was performed using muscle […]

2013
PMCID: 3847183
PMID: 24025157
DOI: 10.1186/1743-422X-10-283

[…] sequencing kit was used (applied biosystems, foster city ca, usa). sequences were assembled and aligned against the measles virus genotype b3 reference sequence (accession number hm439386) using dna baser sequence assembler v3.5.0., the 3′ hypervariable n and hgenes were aligned with reference sequences from genbank using clustalw and neighbor-joining phylogenetic trees constructed using […]

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