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  4. Repetitive DNA
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Bioinformatics software for manual and automatic DNA sequence assembly, DNA sequence analysis, contig editing, file format conversion and mutation detection.

Software type:
Package
Interface:
Graphical user interface
Restrictions to use:
License purchase required
Biological technology:
Roche
Operating system:
Unix/Linux, Windows
License:
Commercial
Computer skills:
Medium
Stability:
Stable
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    PMID: 24086547
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    PMID: 23358380
  • (Bradnam et al., 2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience.
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  • (Salzberg et al., 2012) GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome research.
    PMID: 22147368
  • (Utturkar et al., 2014) Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics.
    PMID: 24930142
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    PMID: 21102452
  • (Love et al., 2016) Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly. BMC genomics.
    PMID: 26944054

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