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DNA methylation data deconvolution | Epigenome analysis

ReFACTor
Desktop

ReFACTor Reference-Free Adjustment for Cell-Type composition

A method based on principal component analysis (PCA) and designed for the…

A method based on principal component analysis (PCA) and designed for the correction of cell type heterogeneity in epigenome-wide association studies (EWAS). ReFACTor tool is based on a variant of…

FaST-LMM-EWAShe…
Desktop

FaST-LMM-EWASher

An R version of FaST-LMM-EWASher, which performs epigenome-wide association…

An R version of FaST-LMM-EWASher, which performs epigenome-wide association analysis in the presence of confounders such as cell-type heterogeneity. A python version of this software is also…

RefFreeEWAS
Desktop

RefFreeEWAS RefFree Epigenome-Wide Association Studies

Permits reference-free deconvolution. RefFreeEWAS offers a method for…

Permits reference-free deconvolution. RefFreeEWAS offers a method for evaluating the extent to which the underlying reflects specific types of cells. It differs from widely used principal components…

EDec
Desktop

EDec Epigenomic Deconvolution

Provides accurate platform-independent estimation of cell type proportions, DNA…

Provides accurate platform-independent estimation of cell type proportions, DNA methylation profiles and gene expression profiles of constituent cell type. EDec enables deconvolution of complex tumor…

methylSpectrum
Desktop

methylSpectrum

Deconvolutes of DNA methylation array data into source contributions from…

Deconvolutes of DNA methylation array data into source contributions from distinct cell types. methylSpectrum is a method for inferring changes in the distribution of white blood cells between…

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