DNA methylation microarray software tools

DNA methylation is involved in numerous physiological processes and also disease states, such as cancer (Jones, 2012). This has raised wide interest in developing large-scale DNA methylation profiling technologies to improve our molecular understanding of diseases. The recently…

DNA methylation array analysis steps

Most recent bioinformatics tools

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GeneTopics
Algorithm

GeneTopics

Ccombines ideas from gene set enrichment with topic model inference. GeneTopics…

Ccombines ideas from gene set enrichment with topic model inference. GeneTopics is able to quickly and comprehensively identify topics in the literature that a biologist should consider when…

C-State
Web
Desktop

C-State Chromatin-State

Provides a pipeline to load user-generated genome-wide peak information files.…

Provides a pipeline to load user-generated genome-wide peak information files. C-State is a single-page application for comparative epigenomic analysis. It offers simple graphical user interface…

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paraGSEA
Desktop

paraGSEA

Accelerates querying of large-scale transcription profiles all-pairs comparison…

Accelerates querying of large-scale transcription profiles all-pairs comparison and global clustering analysis on transcriptomic datasets. paraGSEA is based on a scalable parallel algorithm. It is…

DMRMark
Desktop

DMRMark DMR detection based on non-homogeneous hidden Markov model

Models methylation status and detects differentially methylated regions (DMRs)…

Models methylation status and detects differentially methylated regions (DMRs) from methylation array data. DMRMark is based on non-homogeneous hidden Markov model (HMM). It can systematically pool…

Most popular analytical software

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

FastDMA
Desktop

FastDMA

A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which…

A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which is featured as multiple core parallel computing.

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g:Profiler
Web

g:Profiler

Provides tool to perform functional enrichment analysis and mine additional…

Provides tool to perform functional enrichment analysis and mine additional information. g:Profiler is a web server that allows to characterize and manipulate gene lists of high-throughput genomics.…

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