DNA methylation microarray data analysis bioinformatics software tools

DNA methylation is involved in numerous physiological processes and also disease states, such as cancer (Jones, 2012). This has raised wide interest in developing large-scale DNA methylation profiling microarray technologies to improve our molecular understanding of diseases.…

DNA methylation array analysis steps

DNA methylation microarray data analysis bioinformatics software tools

Most Recent Tools

NHMMfdr
Desktop

NHMMfdr

Implements False Discovery Rate (FDR) control for multiple comparisons under…

Implements False Discovery Rate (FDR) control for multiple comparisons under dependence. NHMMfdr allows to be incorporated in the model to improve detection of significant tests for informative…

LumiWCluster
Desktop

LumiWCluster

Allows to remove the source of biases in Illumina Methylation BeadArray.…

Allows to remove the source of biases in Illumina Methylation BeadArray. LumiWCluster is a weighted model-based clustering based on many positive control samples and enables to measure observation…

methylDMV
Desktop

methylDMV

Allows to incorporate adjustment for confounding variables that potentially…

Allows to incorporate adjustment for confounding variables that potentially affect methylation levels. methylDMV works about simultaneous detection of differential mean (DM) and differential…

ABC.RAP
Desktop

ABC.RAP Array Based CpG Region Analysis Pipeline

Identifies candidate genes that are “differentially methylated” between…

Identifies candidate genes that are “differentially methylated” between cases and controls. ABC.RAP applies Student’s t-test and delta beta analysis to identify candidate genes containing…

Most Popular Tools

FastDMA
Desktop

FastDMA

A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which…

A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which is featured as multiple core parallel computing.

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