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DNA modification databases | Epigenome analysis

Covalent DNA modifications, such as 5-methylcytosine (5mC), are increasingly the focus of numerous research programs. In eukaryotes, both 5mC and 5-hydroxymethylcytosine are now recognized as stable epigenetic marks, with diverse functions.…
DNAmod
Dataset

DNAmod

Annotates the chemical properties and structures of all curated modified DNA…

Annotates the chemical properties and structures of all curated modified DNA bases. DNAmod provides a web interface to easily browse and search through DNA modifications. DNAmod includes manual…

REPAIRtoire
Dataset

REPAIRtoire

A comprehensive database resource for systems biology of DNA damage and repair.…

A comprehensive database resource for systems biology of DNA damage and repair. REPAIRtoire collects and organizes the following types of information: (i) DNA damage linked to environmental mutagenic…

epiMINE
Desktop

epiMINE

A program for mining epigenomic data. EpiMINE is a stand-alone computational…

A program for mining epigenomic data. EpiMINE is a stand-alone computational program designed to support multiple datasets, for performing genome-wide correlative and quantitative analysis of…

REBASE
Dataset

REBASE

A comprehensive and fully curated database of information about the components…

A comprehensive and fully curated database of information about the components of restriction-modification (RM) systems. REBASE contains fully referenced information about recognition and cleavage…

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