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DNA Motif Identification aND Analyses DMINDA

Alternative name: DMINDA 2.0 | DMINDA2

Allows to indentify and analyse regulatory DNA motif. DMINDA is a motif analysis web server that contains six motif analysis functions: i) motif finding; (ii) motif scanning; (iii) motif comparison; (iv) motif co-occurrence analysis; (v) motif prediction by phylogenetic footprinting (namely MP3); and (vi) regulon prediction. The software can benefit the genomic research community in general and prokaryotic genome researchers in particular.

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DMINDA classification

DMINDA specifications

Interface:
Web user interface
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Version:
2.0
Maintained:
Yes

Subtools

  • MP3
  • Regulon Prediction
  • GOST
  • Cytoscape Visualization
  • DOOR2
  • BoBro
  • BoBro 2.0

DMINDA support

Maintainer

  • Qin Ma <>

Additional information

Tutorial: http://bmbl.sdstate.edu/DMINDA2/documentation.php#tabs-2

Credits

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Publications

Institution(s)

Bioinformatics and Mathematical Biosciences Lab, Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD, USA; Department of Mathematics and Statistics, South Dakota State University, Brookings, SD, USA; Center for Applied Mathematics, Tianjin University, Tianjin, China; BioSNTR, Brookings, SD, USA; Population Health group, Sanford Research, Sioux Falls, SD, USA

Funding source(s)

Supported by the State of South Dakota Research Innovation Center, the Agriculture Experiment Station of South Dakota State University, and National Science Foundation of United States (1546869).

Link to literature

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