DNA structure analysis steps

DNA structure analysis software tools and databases

Most Recent Tools

Desktop app
3DNA 3DNA

3DNA

A comprehensive software package for the analysis, reconstruction and…

A comprehensive software package for the analysis, reconstruction and visualization of three-dimensional nucleic acid structures. 3DNA can be applied to parallel and antiparallel double helices,…

R-loopDB R-loopDB

R-loopDB

A collection of computationally predicted R-loop forming sequences (RLFSs).…

A collection of computationally predicted R-loop forming sequences (RLFSs). R-loopDB is a comprehensive database of RLFSs in eight organisms, i.e. human, chimp, mouse, rat, chicken, frog, fruit fly…

Web app
QuadBase QuadBase

QuadBase

Allows multiplexed putative G4 (PG4) motif mining in large number of nucleotide…

Allows multiplexed putative G4 (PG4) motif mining in large number of nucleotide sequences and also enables profiling complete prokaryotic genomes. QuadBase is linked with Ensembl's genomic…

Desktop app
DNAshapeR DNAshapeR

DNAshapeR

Predicts DNA shape features in an ultra-fast, high-throughput manner from…

Predicts DNA shape features in an ultra-fast, high-throughput manner from genomic sequencing data. The package takes either nucleotide sequence or genomic coordinates as input and generates various…

Most Popular Tools

Desktop app
QmRLFS-finder QmRLFS-finder

QmRLFS-finder

Predicts R-loop Forming Sequences (RLFSs) in nucleic acid sequences based on…

Predicts R-loop Forming Sequences (RLFSs) in nucleic acid sequences based on experimentally supported structural models of RLFSs. This tool identifies and visualizes RLFS coordinates from any natural…

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