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DNA structure analysis software tools and databases

DNA structure analysis steps

Most recent bioinformatics tools

DNAmelt
Desktop

DNAmelt

Allows users to compute melting profiles. DNAmelt is numerically stable for…

Allows users to compute melting profiles. DNAmelt is numerically stable for arbitrary sequence lengths, avoiding underflow problems related to the extensivity of the free energy. It permits users to…

PREDICTOR
Web

PREDICTOR

Combines theoretical calculations with the knowledge contained in the…

Combines theoretical calculations with the knowledge contained in the experimental X-ray crystal structure databases of oligonucleotides to predict the conformational properties of DNA oligomers.…

SIDDBASE
Dataset

SIDDBASE

Provides stress-induced DNA duplex destabilization (SIDD) profiles of microbial…

Provides stress-induced DNA duplex destabilization (SIDD) profiles of microbial genomes. SIDDBASE is a database that gives users an overview of the SIDD sites in their selected genome, and their…

3D-NuS
Web

3D-NuS 3-Dimensional Nucleic acid Structures

Allows users to build three-dimensional structures. 3D-NuS builds 3D models of…

Allows users to build three-dimensional structures. 3D-NuS builds 3D models of right handed intra/intermolecular DNA/RNA duplexes and RNA-DNA hybrid duplexes, left handed Z-DNA/Z-RNA duplexes,…

Most popular analytical software and databases

QmRLFS-finder
Desktop

QmRLFS-finder

Predicts R-loop Forming Sequences (RLFSs) in nucleic acid sequences based on…

Predicts R-loop Forming Sequences (RLFSs) in nucleic acid sequences based on experimentally supported structural models of RLFSs. This tool identifies and visualizes RLFS coordinates from any natural…

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