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DNA triplex detection software tools | Genome annotation

A triplex target DNA site (TTS), a stretch of DNA that is composed of polypurines, is able to form a triple-helix (triplex) structure with triplex-forming oligonucleotides (TFOs) and is able to influence the site-specific modulation of gene…
Triplex
Desktop

Triplex

Searches and visualizes intramolecular triplex-forming sequences in DNA.…

Searches and visualizes intramolecular triplex-forming sequences in DNA. triplex provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence.…

Triplexator
Desktop

Triplexator

A computational framework that integrates all aspects of triplex formation.…

A computational framework that integrates all aspects of triplex formation. Triplexator employs approximate pattern matching in order to find putative TFO/TTS pairs (triplexes) in two sets of…

TDF
Desktop

TDF Triplex Domain Finder

Characterizes the triple helix forming potential of RNA and DNA regions. TDF…

Characterizes the triple helix forming potential of RNA and DNA regions. TDF tests whether particular RNA regions are likely to form DNA binding domains (DBD) in candidate lncRNAs and potential…

Triplex-Inspect…
Desktop

Triplex-Inspector

A computational aid for the sophisticated design of sequence-specific ligands…

A computational aid for the sophisticated design of sequence-specific ligands and selection of appropriate targets, taking gene location and genomic architecture into account. Triplex-Inspector is a…

TTS mapping
Web

TTS mapping

Provides comprehensive visual and analytical tools to help users to find…

Provides comprehensive visual and analytical tools to help users to find potential TTSs (pTTSs), G-quadruplets and other regulatory DNA elements in various genome regions. TTS Mapping not only…

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