DNABarcodes protocols

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DNABarcodes specifications

Information


Unique identifier OMICS_14651
Name DNABarcodes
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.10.0
Stability Stable
Requirements
parallel, Matrix, BiocStyle, rmarkdown, knitr, BH, Rcpp(>=0.11.2)
Maintained Yes

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  • person_outline Tilo Buschmann <>

Publication for DNABarcodes

DNABarcodes in pipeline

2016
PMCID: 4740829
PMID: 26877679
DOI: 10.3897/zookeys.554.6069

[…] ones (c_lepfolf/c_lepfolr) (ivanova - published on http://www.boldsystems.org). the standard pcr reaction protocol of the canadian center for dna barcoding was used for amplifications (http://www.dnabarcodes2011.org/conference/preconference/ccdb-amplification-animals.pdf), and products were checked on a 2% e-gel 96agarose (invitrogen). unpurified pcr amplicons were sequenced […]


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DNABarcodes in publications

 (4)
PMCID: 5654825
PMID: 29066821
DOI: 10.1038/s41598-017-12825-2

[…] more sophisticated barcode library design methods based on error-correcting codes have been proposed for correcting substitutions and indel errors inherent to ngs sequencing technologies,–. the dnabarcodes r package implements the error-correcting codes based generation method of buschmann and bystrykh. the libraries described in the package manual contain from tens to hundreds of barcodes. […]

PMCID: 4740829
PMID: 26877679
DOI: 10.3897/zookeys.554.6069

[…] ones (c_lepfolf/c_lepfolr) (ivanova - published on http://www.boldsystems.org). the standard pcr reaction protocol of the canadian center for dna barcoding was used for amplifications (http://www.dnabarcodes2011.org/conference/preconference/ccdb-amplification-animals.pdf), and products were checked on a 2% e-gel 96agarose (invitrogen). unpurified pcr amplicons were sequenced […]

PMCID: 3148223
PMID: 21829594
DOI: 10.1371/journal.pone.0019491

[…] index fungorum (<http://www.indexfungorum.org/>); molecular sequence data: genbank (<http://www.ncbi.nlm.nih.gov/genbank/>), barcode of life (<http://www.dnabarcodes.org/>), greengenes (<http://greengenes.lbl.gov>); images: morphbank (<http://www.morphbank.net/>), arkive (<http://arkive.org/>); phylogenetic relationships: tree […]

PMCID: 2838844
PMID: 20175901
DOI: 10.1186/1471-2164-11-126

[…] and non-coding dna markers, we calculated the sequence divergence of the mitochondrial cytochrome oxydase i gene (coi), used by the barcode of life initiative for characterizing species http://www.dnabarcodes.org/, and the two introns of the reticulon 4 (rtn4) gene, used to infer fish phylogenies at the specific level []. most of the tentatively annotated transcripts display higher sequence […]


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DNABarcodes institution(s)
Department of Diagnostics, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany
DNABarcodes funding source(s)
This work was supported by the European Commission project EuroSyStem (200270) and by the RIBOLUTION project of Fraunhofer-Zukunftsstiftung.

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