DNABINDPROT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DNABINDPROT
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Tool usage distribution map

This map represents all the scientific publications referring to DNABINDPROT per scientific context
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Associated diseases

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Popular tool citations

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Protocols

DNABINDPROT specifications

Information


Unique identifier OMICS_03576
Name DNABINDPROT
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DNABINDPROT

DNABINDPROT citations

 (2)
library_books

The Chromosomal parDE2 Toxin–Antitoxin System of Mycobacterium tuberculosis H37Rv: Genetic and Functional Characterization

2016
Front Microbiol
PMCID: 4906023
PMID: 27379032
DOI: 10.3389/fmicb.2016.00886

[…] family (cl09921) is predicted by PSIPRED (UCL) to contain four alpha helices. DNA binding amino acid residues in the N-terminal of MParD2 were predicted based on a Gaussian network model () using the DNABindProt prediction tool (), and subsequently substituted by alanine. Binding of L8A, V11A and E21A, MParD2 variants to the promoter region was not affected due to mutation. However, the S15A and R […]

call_split

A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

2015
PLoS Comput Biol
PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639
call_split See protocol

[…] fix “_RNA” and “_DNA” are RNA mode and DNA mode respectively. PRNA and Predict_RBP were trained on PRNA_R205 and BindN_R107 respectively, without cross-validation and applied with default parameters. DNABINDPROT was predicted with option “Fast 1” and DR_bind1 was predicted in the RNA mode. N-terminal and C-terminal residues not predicted by PRBR are taken as non-binding sites and assigned 0 as pre […]


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DNABINDPROT institution(s)
Department of Chemical Engineering and Polymer Research Center, Bogazici University, Bebek, Istanbul

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