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DNAlive specifications


Unique identifier OMICS_03589
Name DNAlive
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


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Unraveling the sequence dependent polymorphic behavior of d(CpG) steps in B DNA

Nucleic Acids Res
PMCID: 4191396
PMID: 25223784
DOI: 10.1093/nar/gku809

[…] simulation were used to produce the results (see supplementary figure s1 in supplementary material). all the trajectories were pre-processed with the cpptraj module of the ambertools 13 package (), dnalive () and local tools developed in the group (http://mmb.pcb.ub.es/www/tools). dna helical parameters and backbone torsion angles associated with the cg step and its neighboring steps […]


Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast

BMC Genomics
PMCID: 3224377
PMID: 21981773
DOI: 10.1186/1471-2164-12-489

[…] [] confirming the robustness of our conclusions. dinucleotide and tetranucleotide data (see below and additional file : additional methods) are available upon request and are incorporated in our dnalive webserver (http://mmb.pcb.ub.es/dnalive),, as previously suggested by other groups ([,,-]) mnase resistant regions in nucleosomal dna are mainly concentrated at the beginning of transcribed […]

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DNAlive institution(s)
Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Parc Científic de Barcelona, Barcelona, Spain

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