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DNAMAN specifications

Information


Unique identifier OMICS_30618
Name DNAMAN
Software type Application/Script
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 10
Stability No
Free trial Yes
Maintained Yes

Subtool


  • LBDraw

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Maintainer


  • person_outline DNAMAN Team

DNAMAN citations

 (946)
library_books

Identification and tissue distribution of chemosensory protein and odorant binding protein genes in Tropidothorax elegans Distant (Hemiptera: Lygaeidae)

2018
Sci Rep
PMCID: 5958050
PMID: 29773848
DOI: 10.1038/s41598-018-26137-6

[…] SignalP 4.1 server (http://www.cbs.dtu.dk/services/SignalP/). The similarity searches were performed using NCBI BLAST (http://blast.ncbi.nlm.nih.gov/). Multiple sequence alignment was conducted using DNAMAN 6.0. Amino acid sequence alignments of the matured OBPs and CSPs from T. elegans and other Hemipteran species were performed using MAFFT (http://mafft.cbrc.jp/alignment/server/clustering.html), […]

call_split

Heterologous expression of ZjOMT from Zoysia japonica in Escherichia coli confers aluminum resistance through melatonin production

2018
PLoS One
PMCID: 5937781
PMID: 29734371
DOI: 10.1371/journal.pone.0196952
call_split See protocol

[…] AC which were designed according to the Zoysia Genome Database (http://zoysia.kazusa.or.jp/). The PCR product was cloned into the pGEM-T (Promega, USA) and subsequently sequenced.CDS was predicted by DNAMAN 7 software (Lynnon Corporation). The domain of the deduced ZjOMT protein was analyzed using Conserved Domain Database (CDD) (https://www.ncbi.nlm.nih.gov/cdd). The theoretical pI and molecular […]

call_split

Characterization and Genomic Study of Phage vB_EcoS B2 Infecting Multidrug Resistant Escherichia coli

2018
Front Microbiol
PMCID: 5945888
PMID: 29780362
DOI: 10.3389/fmicb.2018.00793
call_split See protocol

[…] er RNAs (tRNAs) were identified using tRNAscan-SE (v1.23, http://lowelab.ucsc.edu/tRNAscan-SE) and ribosome RNAs (rRNAs) were determined using RNAmmer (v1.2, http://www.cbs.dtu.dk/services/RNAmmer/). DNAman was used to calculate molecular masses and isoelectric points for predicted phage proteins. The whole viral nucleotide sequence similarities between phages were determined by megablast analysis […]

library_books

Involvement of Met and Kr h1 in JH Mediated Reproduction of Female Bactrocera dorsalis (Hendel)

2018
Front Physiol
PMCID: 5945869
PMID: 29780329
DOI: 10.3389/fphys.2018.00482

[…] Following first-strand cDNA synthesis of BdKr-h1 and BdMet with a PrimeScript RT reagent kit (Takara, Dalian, China), qRT-PCR primers were designed (Supplementary Table ) using Primer3.0 and DNAMAN v.6.03. The amplification efficiency of each pair of primers was first validated by constructing a standard curve based on a fivefold cDNA dilution series, with the data then analyzed in Biogaz […]

call_split

Activation of disease resistance against Botryosphaeria dothidea by downregulating the expression of MdSYP121 in apple

2018
PMCID: 5928070
PMID: 29736249
DOI: 10.1038/s41438-018-0030-5
call_split See protocol

[…] amplicons were subcloned into a pLB vector (Tiangen, China). Homologous MdSYP121 protein sequences were retrieved from the National Center Biotechnology Information (NCBI) database and aligned using DNAMAN 5.2.2 software (Lynnon Biosoft, USA). A phylogenetic tree was subsequently generated using the Neighbour Joining method with MEGA 5.0 software. A MdSYP121 fragment from 121 to 613 bp was used f […]

library_books

A wheat caffeic acid 3 O methyltransferase TaCOMT 3D positively contributes to both resistance to sharp eyespot disease and stem mechanical strength

2018
Sci Rep
PMCID: 5916939
PMID: 29695751
DOI: 10.1038/s41598-018-24884-0

[…] pute_pi/) to determine the theoretical iso-electric point and molecular weight, Pfam database (http://pfam.xfam.org) and smart software (http://smart.embl-heidelberg.de/) to predict conserved motifs, DNAMAN software to analyze sequence identity. […]

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