DNApi specifications

Information


Unique identifier OMICS_13264
Name DNApi
Alternative name De Novo Adapter prediction iterative algorithm
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A small RNA sequence.
Input format FASTQ,stdin
Output data The predicted 3´ adapter sequence, cleansed small RNA sequence.
Output format FASTA, SAM
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Documentation


Maintainer


  • person_outline Zhiping Weng <>

Publication for De Novo Adapter prediction iterative algorithm

DNApi institution(s)
Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA
DNApi funding source(s)
Partly supported by the National Institutes of Health grants R01 NS073947 (Epigenetic Markers in Huntington Disease Brain) and P01 HD078253 (Small Silencing RNA Function in Genome Maintenance and Gamete Development).

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