Performs structure analysis of DNA–protein complexes and extract structural features from the complex via an automated structure-processing pipeline. DNAproDB provides a database of DNA–protein complexes and a unique, interactive visualizations for each structure, which can be exported and downloaded at high resolution. Users can process a structure using the DNAproDB pipeline and can visualize extracted features from a generated report page for the structure by uploading a structure file of a DNA–protein complex.
Molecular and Computational Biology Program, Departments of Biological Sciences, Chemistry, Physics & Astronomy, and Computer Science, University of Southern California, Los Angeles, CA, USA; RCSB Protein Data Bank, Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
DNAproDB funding source(s)
This work was supported by National Institutes of Health [R01GM106056, U01GM103804, R01HG003008]; USC Bridge Institute Catalyst Grant; Alfred P. Sloan Research Fellowship.