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Protocols

DNAproDB specifications

Information


Unique identifier OMICS_17611
Name DNAproDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Remo Rohs

Publication for DNAproDB

DNAproDB citation

call_split

Biochemical and structural characterization of a novel cooperative binding mode by Pit 1 with CATT repeats in the macrophage migration inhibitory factor promoter

2017
Nucleic Acids Res
PMCID: 5778499
PMID: 29186613
DOI: 10.1093/nar/gkx1183
call_split See protocol

[…] ure. Structural figures were generated using PyMOL (). Software used in this project was curated by SBGrid (). The nucleotide-residue contact map was obtained by analysis of the final structure using DNAproDB (). […]


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DNAproDB institution(s)
Molecular and Computational Biology Program, Departments of Biological Sciences, Chemistry, Physics & Astronomy, and Computer Science, University of Southern California, Los Angeles, CA, USA; RCSB Protein Data Bank, Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
DNAproDB funding source(s)
This work was supported by National Institutes of Health [R01GM106056, U01GM103804, R01HG003008]; USC Bridge Institute Catalyst Grant; Alfred P. Sloan Research Fellowship.

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