DHC-MEGE specifications

Unique identifier:
OMICS_13784
Software type:
Package/Module
Restrictions to use:
None
Input format:
BED8, FASTA
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Name:
DNase Hypersensitivity Connectivity Motif Enrichment in GeneExpression
Interface:
Command line interface
Input data:
A list of up genes and down genes, a DNase hypersensitivity connectivity map, a genome sequence
Output data:
A list of gene which details the occurrence of sequence motifs across the hypersensitive regions of the genome
License:
GNU General Public License version 3.0
Stability:
Stable

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DHC-MEGE distribution

download

DHC-MEGE support

Maintainer

  • Mark Ziemann <>

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Publications

Institution(s)

Epigenetics in Human Health and Disease Laboratory; Epigenomics Profiling Facility, Baker IDI Heart & Diabetes Institute, The Alfred Medical Research and Education Precinct, Melbourne, Australia; Department of Pathology, The University of Melbourne, Australia; Central Clinical School, Department of Medicine, Monash University, Australia; Medical Bioinformatics, Baker IDI Heart & Diabetes Institute

Funding source(s)

This work was supported by the Juvenile Diabetes Research Foundation International (JDRF), the National Health and Medical Research Council (NHMRC), the National Heart Foundation of Australia (NHF) and the Victorian Government’s Operational Infrastructure Support Program.

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