- Unique identifier:
- Software type:
- Restrictions to use:
- Input format:
- BED8, FASTA
- Operating system:
- Computer skills:
- DNase Hypersensitivity Connectivity Motif Enrichment in GeneExpression
- Command line interface
- Input data:
- A list of up genes and down genes, a DNase hypersensitivity connectivity map, a genome sequence
- Output data:
- A list of gene which details the occurrence of sequence motifs across the hypersensitive regions of the genome
- GNU General Public License version 3.0
- Mark Ziemann <>
No open topic.
(Ziemann et al., 2013)
Motif analysis in DNAse hypersensitivity regions uncovers distal cis elements associated with gene expression.
PMID: 23519433 DOI: 10.6026/97320630009212
Epigenetics in Human Health and Disease Laboratory; Epigenomics Profiling Facility, Baker IDI Heart & Diabetes Institute, The Alfred Medical Research and Education Precinct, Melbourne, Australia; Department of Pathology, The University of Melbourne, Australia; Central Clinical School, Department of Medicine, Monash University, Australia; Medical Bioinformatics, Baker IDI Heart & Diabetes Institute
This work was supported by the Juvenile Diabetes Research Foundation International (JDRF), the National Health and Medical Research Council (NHMRC), the National Heart Foundation of Australia (NHF) and the Victorian Government’s Operational Infrastructure Support Program.
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