DNase-seq data analysis software tools
Sequencing of DNase I hypersensitive sites (DNase-seq) is a powerful technique for identifying cis-regulatory elements across the genome. Many people currently analyzing DNase-seq data are using tools designed for ChIP-seq work, but may be inappropriate for DNase-seq data.
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377 tools
De novo footprint detection
4 tools
Motif-guide footprint detection
15 tools
Peak calling
103 tools
De novo motif discovery
84 tools
Peak annotation
29 tools
Bioinformatics workflows
3 tools
File format conversion
184 tools
File merging
46 tools
File filtering
72 tools
File indexation
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File comparison
28 tools
File sorting
32 tools
File intersection
13 tools
File parsing-extraction
61 tools
File sampling
18 tools
File splitting
17 tools
File editing
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Variant aggregation/summarization
10 tools
File compression
105 tools