DNase-seq data analysis software tools
Sequencing of DNase I hypersensitive sites (DNase-seq) is a powerful technique for identifying cis-regulatory elements across the genome. Many people currently analyzing DNase-seq data are using tools designed for ChIP-seq work, but may be inappropriate for DNase-seq data.
Read alignment
377 tools
De novo footprint detection
4 tools
Motif-guide footprint detection
15 tools
Peak calling
103 tools
De novo motif discovery
84 tools
Peak annotation
29 tools
Bioinformatics workflows
3 tools
File format conversion
184 tools
File merging
46 tools
File filtering
72 tools
File indexation
48 tools
File comparison
28 tools
File sorting
32 tools
File intersection
13 tools
File parsing-extraction
61 tools
File sampling
18 tools
File splitting
17 tools
File editing
24 tools
Variant aggregation/summarization
10 tools
File compression
105 tools