DNase-seq data analysis software tools
Sequencing of DNase I hypersensitive sites (DNase-seq) is a powerful technique for identifying cis-regulatory elements across the genome. Many people currently analyzing DNase-seq data are using tools designed for ChIP-seq work, but may be inappropriate for DNase-seq data.
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Read alignment
389 tools
De novo footprint detection
4 tools
Motif-guide footprint detection
15 tools
Peak calling
104 tools
De novo motif discovery
85 tools
Peak annotation
29 tools
Bioinformatics workflows
3 tools
File format conversion
190 tools
File merging
46 tools
File filtering
73 tools
File indexation
49 tools
File comparison
29 tools
File sorting
33 tools
File intersection
14 tools
File parsing-extraction
63 tools
File sampling
18 tools
File splitting
17 tools
File editing
25 tools
Variant aggregation/summarization
10 tools
File compression
110 tools
