DNemulator statistics

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DNemulator specifications

Information


Unique identifier OMICS_09921
Name DNemulator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Martin Frith <>

Publication for DNemulator

DNemulator in publications

 (2)
PMCID: 4682380
PMID: 26681544
DOI: 10.1186/1471-2164-16-S12-S3

[…] last [] to align bisulfite-converted reads to reference sequences. the alignment results were used as the common input for each dmr detection method., we simulated bisulfite-converted reads using dnemulator []. the human chromosome × (chrx) was used as a reference. methylation levels were assigned for all cpg sites in the chrx. 87-bp sinlgle-end reads were generated from random loci […]

PMCID: 3624798
PMID: 23413433
DOI: 10.1093/bioinformatics/btt073

[…] although it is desirable to work with real datasets, they are accompanied by the problem of not knowing the true genomic location of the reads. this limits us to working with simulated data. using dnemulator (www.cbrc.jp/dnemulator), a package for simulating dna sequencing errors and polymorphisms, we generated paired-end reads from chromosomes 1–22 and x of the human genome hg19. starting […]


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DNemulator institution(s)
Computational Biology Research Center, National Institute for Advanced Industrial Science and Technology (AIST), Koto-ku, Tokyo, Japan; Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan
DNemulator funding source(s)
Grant-in-Aid for Scientific Research on Innovative Areas 221S0002 from the Ministry of Education, Culture, Sports, Science and Technology in Japan; National Cancer Center Research and Development Fund 23-A-8

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