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dnet specifications


Unique identifier OMICS_04801
Name dnet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained No


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Publication for dnet

dnet citation


Human Primary Liver Cancer derived Organoid Cultures for disease modelling and drug screening

Nat Med
PMCID: 5722201
PMID: 29131160
DOI: 10.1038/nm.4438

[…] signatures were annotated: the description of their corresponding proteins was downloaded from uniprot, and their relevance to disease by retrieving the disease ontology terms (using the r package dnet v1.0.10)., dna from tumour tissue and matched tumouroid lines was extracted using dneasy blood & tissue kit (qiagen) according to manufacturers' protocol. point mutations and short indels […]

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dnet institution(s)
Computational Genomics Group, Department of Computer Science, University of Bristol, The Merchant Venturers Building, Bristol,UK

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