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DNPTrapper | An assembly editing tool for finishing and analysis of complex repeat regions

An assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions. DNPTrapper differs from previous tools by providing flexibility and an overview that greatly simplifies the finishing process, by allowing the user to view whole repeat regions at once and to edit assembly errors manually by drag and drop. The program implements and visualizes the results of a previously described statistical method that detects defined nucleotide positions (DNPs, representing single base differences between repeat units) in the presence of sequencing errors.

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DNPTrapper classification

DNPTrapper specifications

Unique identifier:
OMICS_00881
Interface:
Command line interface
Operating system:
Unix/Linux
License:
BSD 2-clause “Simplified” License
Version:
1.0
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable

DNPTrapper distribution

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DNPTrapper classification

DNPTrapper specifications

Unique identifier:
OMICS_00881
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable
Interface:
Web user interface
Programming languages:
C++
Version:
1.0
Maintained:
Yes

DNPTrapper support

Maintainer

  • Erik Arner <>
  • Erik Arner <>

Credits

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Publications

Institution(s)

Karolinska Institute, Center for Genomics and Bioinformatics, Stockholm, Sweden

Funding source(s)

This work was supported by grants from the Swedish Research Council and NIH (U01 AI045061).

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