DoBi specifications

Information


Unique identifier OMICS_17330
Name DoBi
Software type Package/Module
Interface Command line interface
Operating system Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Requirements
JRE
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Lusheng Wang

Publication for DoBi

DoBi citation

library_books

Progress and challenges in predicting protein interfaces

2015
Brief Bioinform
PMCID: 4719070
PMID: 25971595
DOI: 10.1093/bib/bbv027

[…] ew on docking see [, ]). These methods generate docked poses of the two query proteins and detect interfaces based on contact energy and frequency scores []. The two main methods in this category are DoBi and RCF [, ]. DoBi (F-scores ∼ 0.55) outperformed the 3D classifiers such as MetaPPI, meta-PPISP, PPI-Pred, PINUP and ProMate (F-scores of 0.35, 0.43, 0.32, 0.43 and 0.21, respectively) []. While […]

DoBi institution(s)
School of Computer Science and Technology, Shandong University, Jinan, China; Department of Computer Science, Kowloon, Hong Kong
DoBi funding source(s)
This work is supported by a grant from the Research Grants Council of the Hong Kong Special Administrative Region, China [Project No. CityU 122511] and a grant from City University of Hong Kong [Project No. 9610025].

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