DockoMatic statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DockoMatic
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Tool usage distribution map

This map represents all the scientific publications referring to DockoMatic per scientific context
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Associated diseases

This word cloud represents DockoMatic usage per disease context
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Popular tool citations

chevron_left Ligand-based virtual screening Structure homology search chevron_right
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Protocols

DockoMatic specifications

Information


Unique identifier OMICS_28917
Name DockoMatic
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Medium
Version 2.1
Stability Beta
Maintained Yes

Subtool


  • SPIDR (Small-molecule Peptide-Influenced Drug

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Versioning


No version available

Maintainer


  • person_outline Owen McDougal

Publications for DockoMatic

DockoMatic citations

 (3)
library_books

Docking based inverse virtual screening: methods, applications, and challenges

2018
Biophysics Rep
PMCID: 5860130
PMID: 29577065
DOI: 10.1007/s41048-017-0045-8

[…] ntain similar binding pockets collected from both sc-PDB and PDB are also selected for screening.In addition to the web servers described above, Bullock et al. provided a free and open source program DockoMatic2.0 (Bullock et al. ), with which the user is able to perform docking-based IVS through a graphical user interface (GUI). AutoDock (Morris et al. ) or AutoDock Vina (Trott and Olson ) can be […]

call_split

Fortilin potentiates the peroxidase activity of Peroxiredoxin 1 and protects against alcohol induced liver damage in mice

2016
Sci Rep
PMCID: 4698670
PMID: 26726832
DOI: 10.1038/srep18701
call_split See protocol

[…] DockoMatic V 2.0 is a graphical user interface that facilitates the use of AutoDock V 4.2 as a docking engine to identify energetically favorable molecular interactions. For the purposes of the presen […]

library_books

Accessible High Throughput Virtual Screening Molecular Docking Software for Students and Educators

2012
PLoS Comput Biol
PMCID: 3364939
PMID: 22693435
DOI: 10.1371/journal.pcbi.1002499

[…] , compute, and analyze results. HTVS programs solve these problems through process automation. HTVS programs that use DOCK and AutoDock as their docking engines include DOVIS, VSDocker, WinDock, BDT, DockoMatic, PyRx, DockingServer, and MOLA. The HTVS programs we review are free or inexpensive, and can run on hardware ranging from a personal computer to a computing cluster. Cluster-based HTVS prog […]


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DockoMatic institution(s)
Department of Chemistry and Biochemistry, Boise State University, Boise, ID, USA; Department of Computer Science, Boise State University, Boise, ID, USA; Biomolecular Sciences Ph.D. Program, Boise State University, Boise, ID, USA
DockoMatic funding source(s)
Supported by Institutional Development Awards (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under Grants #P20GM103408 and P20GM109095; by the Biomolecular Research Center at Boise State with funding from the National Science Foundation, Grants # 0619793 and #0923535; the MJ Murdock Charitable Trust; Research Corporation Cottrell College Scholars program; and Boise State University Department of Chemistry and Biochemistry mini-development grant program.

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