DockoMatic specifications

Information


Unique identifier OMICS_28917
Name DockoMatic
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Medium
Version 2.1
Stability Beta
Maintained Yes

Subtool


  • SPIDR (Small-molecule Peptide-Influenced Drug

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Maintainer


  • person_outline Owen McDougal <>

Publications for DockoMatic

DockoMatic in publications

 (2)
PMCID: 4698670
PMID: 26726832
DOI: 10.1038/srep18701

[…] the two key threonine residues (thr90 and thr183) and keeps prx1 unphosphorylated and active, we performed computational modeling of fortilin (pdb id: 2hr9) and prx1 (pdb id: 2rii) in dockomatic v. 2.0. initial docking experiments between the two proteins were configured such that leu on fortilin was within the ligand-binding domain, established using the grid parameter file […]

PMCID: 3364939
PMID: 22693435
DOI: 10.1371/journal.pcbi.1002499

[…] to drug discovery possible at institutional and non-profit budgets. this paper focuses on htvs programs with graphical user interfaces (guis) that use either dock or autodock for the prediction of dockomatic, pyrx, dockingserver, and mola since their utility has been proven by the research community, they are free or affordable, and the programs operate on a range of computer platforms., […]


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DockoMatic institution(s)
Department of Chemistry and Biochemistry, Boise State University, Boise, ID, USA; Department of Computer Science, Boise State University, Boise, ID, USA; Biomolecular Sciences Ph.D. Program, Boise State University, Boise, ID, USA
DockoMatic funding source(s)
Supported by Institutional Development Awards (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under Grants #P20GM103408 and P20GM109095; by the Biomolecular Research Center at Boise State with funding from the National Science Foundation, Grants # 0619793 and #0923535; the MJ Murdock Charitable Trust; Research Corporation Cottrell College Scholars program; and Boise State University Department of Chemistry and Biochemistry mini-development grant program.

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