DockRank statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DockRank
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Tool usage distribution map

This map represents all the scientific publications referring to DockRank per scientific context
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Associated diseases

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Popular tool citations

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DockRank specifications

Information


Unique identifier OMICS_08226
Name DockRank
Interface Web user interface
Restrictions to use None
Input data DockRank takes the PDB formatted files of the docked models as input.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Li Xue

Publications for DockRank

DockRank citations

 (2)
library_books

Drug Like Protein–Protein Interaction Modulators: Challenges and Opportunities for Drug Discovery and Chemical Biology

2014
Mol Inform
PMCID: 4160817
PMID: 25254076
DOI: 10.1002/minf.201400040

[…] ] MEGADOCK,[] pyDockWEB,[] F(2)Dock 2.0 and GB-rerank,[] and SwarmDock (incorporating flexibility).[] These approaches can also benefit from new scoring functions as illustrated by the combination of DockRank and the protein–protein docking tool ClusPro.[] The other approach to build a protein complex is to use template-based modeling which constructs a complex by copying and refining the structur […]

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Structural Interface Parameters Are Discriminatory in Recognising Near Native Poses of Protein Protein Interactions

2014
PLoS One
PMCID: 3912216
PMID: 24498255
DOI: 10.1371/journal.pone.0080255

[…] count only tightness of the interface . Also, conservation of residues has been considered for selecting the near-native conformations from the pool of docked poses . A recent knowledge-based method, DockRank derives the information from homologous interacting proteins for predicting the interface and ranks the docked poses based on the overlap with the predicted interface .When the two components […]


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DockRank institution(s)
Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA, USA; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA; Department of Computer Science, Iowa State University, Ames, IA, USA; Department of Computer Science, Pontificia Universidad Javeriana, Cali, Colombia; Department of Systems and Computer Engineering, AI-Azhar University, Cairo, Egypt

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