A tool to rank protein-protein docked models based on predicted partner-specific protein interface residues. DockRank uses PS-HomPPI to predict the partner-specific protein interface residues for the docked model. By comparing the predicted interfaces and the interfaces in the docked models, DockRank gives a rank for the docked models. The models with high interface similarity with the predicted interfaces are ranked top.
Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA, USA; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA; Department of Computer Science, Iowa State University, Ames, IA, USA; Department of Computer Science, Pontificia Universidad Javeriana, Cali, Colombia; Department of Systems and Computer Engineering, AI-Azhar University, Cairo, Egypt