DockTrina specifications

Information


Unique identifier OMICS_17336
Name DockTrina
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Alpha
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Sergei Grudinin

Publication for DockTrina

DockTrina citations

 (2)
library_books

Large oligomeric complex structures can be computationally assembled by efficiently combining docked interfaces

2015
Proteins
PMCID: 5049452
PMID: 26248608
DOI: 10.1002/prot.24873

[…] Rosetta's symmetry docking protocol, M‐ZDock, or a particle swarm optimization‐based method which predicts homo‐oligomers of up to 24 monomers. Methods not relying on symmetry information also exist: DockTrina can compute asymmetric trimers by scanning combinations of protein dimers via an RMSD‐based test; MDOCK_HEX and CombDock use pairwise dockings to compute clash‐free minimum‐weight spanning t […]

library_books

Drug Like Protein–Protein Interaction Modulators: Challenges and Opportunities for Drug Discovery and Chemical Biology

2014
Mol Inform
PMCID: 4160817
PMID: 25254076
DOI: 10.1002/minf.201400040

[…] ch as SAXS or electron microscopy. Many protein–protein docking engines have been reviewed like for instance in[,] while some new protein–protein docking tools released (or optimized) in 2013 include DockTrina (for docking triangular protein trimers),[] ATTRACT,[] MEGADOCK,[] pyDockWEB,[] F(2)Dock 2.0 and GB-rerank,[] and SwarmDock (incorporating flexibility).[] These approaches can also benefit f […]

DockTrina institution(s)
NANO-D, INRIA Grenoble–Rhone-Alpes, Saint Ismier, Montbonnot, France; Laboratoire Jean Kuntzmann, Grenoble, France; INRIA Nancy–Grand Est, Vandoeuvre-les-Nancy, France
DockTrina funding source(s)
This work was supported by the Agence Nationale de la Recherche; Grant numbers: ANR-2010- JCJC-0206-01, ANR-11-MONU-006-01, and ANR-11-MONU-006-02.

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