Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Document clustering software tools | Information retrieval

Document clustering tools aim to group documents into subjects for easier management of large unordered lists of results. Clustering is mostly performed by the use of MeSH terms, UMLS dictionaries, GO terms, titles, affiliations, keywords, authors,…
GoPubMed
Web

GoPubMed

Allows users to explore PubMed search results with the Gene Ontology (GO), a…

Allows users to explore PubMed search results with the Gene Ontology (GO), a hierarchically structured vocabulary for molecular biology. GoPubMed provides the following benefits: first, it gives an…

DisArticle
Web

DisArticle

Searches for articles only on traditional medicine in Northeast Asia, including…

Searches for articles only on traditional medicine in Northeast Asia, including traditional Chinese medicine. DisArticle is a web server in which users can search for the articles and obtain…

MLTM
Desktop

MLTM

Contains a semisupervised multi-instance (MI) learning method for multilabel…

Contains a semisupervised multi-instance (MI) learning method for multilabel classification. MLTM is a multilabel topic model that discovers a set of M topics (latent structure in the data) and…

Bookshelf
Dataset

Bookshelf

Provides free access to the full text of books and documents in life sciences…

Provides free access to the full text of books and documents in life sciences and health care. Bookshelf is a full-text resource built and maintained by the National Center for Biotechnology…

CHAT
Web

CHAT Cancer Hallmarks Analytics Tool

Analyses and classifies cancer-related literature based on Hallmarks of Cancer…

Analyses and classifies cancer-related literature based on Hallmarks of Cancer (HoC). CHAT enables users to immediately analyse the correlation between any query term and the hallmarks and the…

BIOCEMID
Desktop

BIOCEMID BioC Experimental Molecular Interaction Detection

Identifies passages with experimental methods for physical interactions between…

Identifies passages with experimental methods for physical interactions between proteins as an information retrieval search task. BIOCEMID takes a BioC article as input, processes it, and returns the…

GeneStoryTeller
Mobile

GeneStoryTeller

Provides users a synopsis regarding the information of human genes from various…

Provides users a synopsis regarding the information of human genes from various points of view. GeneStoryTeller is a mobile app which provides general, functional, clinical and network information…

ConsensusCluste…
Desktop

ConsensusClusterPlus

Provides quantitative and visual stability evidence for estimating the number…

Provides quantitative and visual stability evidence for estimating the number of unsupervised classes in a dataset. ConsensusClusterPlus implements the Consensus Clustering (CC) method in R and…

Anne O'Tate
Web

Anne O'Tate

A web-based tool that processes articles retrieved from PubMed and displays…

A web-based tool that processes articles retrieved from PubMed and displays multiple aspects of the articles to the user, according to pre-defined categories such as the "most important"…

XplorMed
Web

XplorMed

Allow you to explore a set of abstracts derived from a MEDLINE search. The…

Allow you to explore a set of abstracts derived from a MEDLINE search. The system gives you the main associations between the words in groups of abstracts. Then, you can select a subset of your…

DPClass
Desktop

DPClass

Resolves pattern-based classification by adopting discriminative patterns which…

Resolves pattern-based classification by adopting discriminative patterns which are the prefix paths from root to nodes in tree-based models. DPClass could perform as good as previous…

PuRed-MCL
Desktop
Web

PuRed-MCL Pubmed Related Documents-MCL

An approach based on the graph clustering algorithm MCL and relevant resources…

An approach based on the graph clustering algorithm MCL and relevant resources from PubMed. PuReD-MCL avoids using natural language processing (NLP) techniques directly; instead, it takes advantage…

McSyBi
Web

McSyBi

Accepts a set of citation data retrieved with PubMed and hierarchically and…

Accepts a set of citation data retrieved with PubMed and hierarchically and non-hierarchically clusters them based on the titles and the abstracts using statistical and natural language processing…

Simple…
Desktop

Simple Classifier

Trains a text document classifier and classify text documents. This machine…

Trains a text document classifier and classify text documents. This machine learning method allow users to identify articles that contain protein-protein interaction (PPI) data. Simple Classifier…

Chmannot
Desktop

Chmannot Cancer HallMark ANNOTator

Provides an automatic annotator of cancer hallmark on biomedical literature.…

Provides an automatic annotator of cancer hallmark on biomedical literature. Chmannot supports abstract-level annotation and gives the abstract of a paper in PubMed to predict the hallmark labels. It…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.