DAMA specifications

Unique identifier:
OMICS_12876
Software type:
Package/Module
Restrictions to use:
None
Input format:
PDB
Programming languages:
C++
Computer skills:
Advanced
Requirements:
BASH
Name:
Domain Annotation by a Multi-objective Approach
Interface:
Command line interface
Input data:
DAMA takes as input two files. The first describes the set of annotated sequences. For each domain, a line reports the sequence identifier, the domain identifier, start and end positions of the domain match on the probabilistic model used for annotation, start and end positions of the domain along the sequence. The second input file contains the list of known domain architectures.
Operating system:
Unix/Linux
License:
CeCILL version 2.1
Stability:
Stable
Maintained:
Yes

versioning

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DAMA distribution

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DAMA support

Maintainer

  • Alessandra Carbone <>

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Publications

Institution(s)

Sorbonne Universités, UPMC Univ-Paris 6, CNRS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative, Paris, France; CNRS, UMR 7606, Laboratoire d'Informatique de Paris 6, Paris, France; COPPE-UFRJ, Programa de Engenharia de Sistemas e Computação, Rio de Janeiro, Brazil; COPPE-UFRJ, Programa de Engenharia de Sistemas e Computação, Rio de Janeiro, Brazil; Institut Universitaire de France, Paris, France

Funding source(s)

This work was partially in the framework of CALSIMLAB, supported by the public grant ANR-11-LABX-0037-0 from the Investissements d’Avenir program (ANR-11-IDEX-0004-02); Institut Universitaire de France and Brazilian National Research Agencies CNPq, CAPES, FAPERJ and FACEPE.

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