DELTA-BLAST specifications

Information


Unique identifier OMICS_14481
Name Domain Enhanced Lookup Time Accelerated BLAST
Interface Web user interface
Restrictions to use None
Input data Accession number(s), gi(s), or FASTA sequence(s)*
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • Protein BLAST

Maintainer


  • person_outline Grzegorz Boratyn <>

DELTA-BLAST article

DELTA-BLAST citations

 (16)
2017
PMCID: 5713248

[…] (available online: http://www.cbs.dtu.dk/services/signalp/). clustalx 1.83 was used for multiple alignments of cyp321a7 and cyp321a9 with related amino acid sequences, which were obtained by a protein blast search on the ncbi homepage (available online: https://blast.ncbi.nlm.nih.gov/blast.cgi). phylogenetic analysis was performed with the mega 6.0 software (neighbor-joining method; 1000 […]

2017
PMCID: 5591248

[…] the proteome-based unrooted and unscaled phylogenetic tree was generated by using the micropan package (v 1.0)55 in r 3.2.356. therefore, the single strain protein fasta files were used for a protein blast all vs. all approach resulting in a phylogenetic similarity matrix. for comparison of the strains’ proteomes to those in the ion library an in silico tryptic digestion (missed cleavages […]

2017
PMCID: 5578850

[…] is 805 bp. this strain has two small rnas (srnas), 55 trnas, and three each of 23s, 16s, and 5s rrnas., functional annotation of b. melitensis qy1 genes within the go database (performed using protein blast, e value, ≤1e-5) showed that 2,368 (66.5%) out of 3,559 protein-coding genes had at least some biological function assigned, with some of the genes assigned to more than one category […]

2017
PMCID: 5323629

[…] nucleotide sequence is 99% identical to the genome sequence of anghv1 (genbank accession no. fj940765.3) and contains 139 predicted protein-coding open reading frames (orfs), as does anghv1. protein-protein blast showed that all the amino acid sequences are 100% identical to the anghv1 counterparts, except orf1. the result suggests that the genotype of the eel herpesviruses in taiwan, including […]

2017
PMCID: 5288813

[…] (msa) with bspk and various bacterial proteases showed that bspk has some similarity to trypsin from omnitrophica bacterium but is quite distant from other currently known proteases (fig. s7). a protein blast on bspk limited to the bdellovibrionales order, followed by a clustalw alignment, resulted in a comprehensive guide tree of different predatory bacteria with homologues to bspk (fig. […]

DELTA-BLAST institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
DELTA-BLAST funding source(s)
This research was supported by the Intramural Research Program of the NIH, National Library of Medicine.

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