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DomainCaller specifications


Unique identifier OMICS_30586
Name DomainCaller
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Bing Ren

Publication for DomainCaller

DomainCaller citation


A critical assessment of topologically associating domain prediction tools

Nucleic Acids Res
PMCID: 5389712
PMID: 28334773
DOI: 10.1093/nar/gkx145

[…] n the case of TADbit, negatively impacting accuracy.At the complete TAD level (Figure ), the level of agreement with our manual annotation was generally lower for all tools. Front runners are TopDom, DomainCaller and TADbit, as well as TADtree, which seems to make up for its lower accuracy at boundary detection with a seemingly stronger boundary pairing approach. Because of the different levels of […]

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DomainCaller institution(s)
Ludwig Institute for Cancer Research, New York, NY, USA; University of California, San Diego School of Medicine, Department of Cellular and Molecular Medicine, Institute of Genomic Medicine, San Diego, CA, USA; Medical Scientist Training Program, University of California, San Diego, San Diego, CA, USA; Biomedical Sciences Graduate Program, University of California, San Diego, San Diego, CA, USA; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, San Diego, CA, USA; Department of Statistics, Harvard University, Cambridge, MA, USA
DomainCaller funding source(s)
Supported by funding from the Ludwig Institute for Cancer Research, California Institute for Regenerative Medicine (CIRM, RN2-00905-1), and NIH (R01GH003991), a pre-doctoral training grant from CIRM and a postdoctoral fellowship from the Rett Syndrome Research Foundation.

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