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DomainSweep specifications

Information


Unique identifier OMICS_24915
Name DomainSweep
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A protein sequence.
Input format FASTA
Output format HTML,XML
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for DomainSweep

DomainSweep in publications

 (4)
PMCID: 4148726
PMID: 25169858
DOI: 10.1128/genomeA.00848-14

[…] the negative strand and the coat protein (cp) on the positive strand. the cp was arginine rich, and a similarity to the torque teno virus (ttv) open reading frame 1 (orf1) protein was indicated in a domainsweep analysis (). the putative rolling circle motifs i, ii, and iii and a walker b motif for each were identified as follows: for hcbi8.215, lltya, hlhafvd, yaikd, and vfddi; for hcbi9.212, […]

PMCID: 3689628
PMID: 23688336
DOI: 10.1186/1477-5956-11-22

[…] were used for annotation of the proteins. “secreted proteins” were annotated according to david’s sp-pir-keywords., proteins which were still unknown and could not be analyzed were run through the domainsweep pipeline which identifies the domain architecture within a protein sequence []. domain hits are listed as ‘significant’ by domainsweep, i. if two or more hits belong to the same interpro […]

PMCID: 3459984
PMID: 23029181
DOI: 10.1371/journal.pone.0045682

[…] are present in the results. identified proteins, which could not be annotated using homology search against the swissprot and ncbinr database were analyzed for specific protein domains using domainsweep. a total of 1135 contigs without annotation were identified including one-peptide identifications. the domainsweep analysis resulted in 129 proteins, which showed significant protein […]

PMCID: 3346310
PMID: 22418845
DOI: 10.4161/rna.18643

[…] each αr family, we located and extracted the flanking genes of their respective members. non-annotated orfs were further annotated using blast2go,, and the high-throughput pipelines protsweep, and domainsweep. the obtained results were later manually inspected in order to annotate and predict a biological function for these orfs. in the few cases where the predicted srnas overlapped orfs, […]


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DomainSweep institution(s)
DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Heidelberg, Germany; Department of Computer Science and Artificial Intelligence, ETSII University of Granada, Granada, Spain

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