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DoMosaics specifications

Information


Unique identifier OMICS_11276
Name DoMosaics
Alternative name AnGSTD
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 0.92
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Andrew Moore <>

Publication for DoMosaics

DoMosaics in publications

 (3)
PMCID: 5400394
PMID: 28104746
DOI: 10.1093/molbev/msx058

[…] (as determined by cd-hit; equivalent to the longest sequence) was passed through for further analysis., overall domain architecture for each sequence was determined using hmmer 3.0 () within the domosaics environment (). batch blastp searches were performed using blast+ v2.2.28+ and a local nr database, to identify the top hit with a maximum e-value of 10 − 4. sequences were assigned to one […]

PMCID: 4574555
PMID: 26379240
DOI: 10.1371/journal.pone.0138360

[…] and signatures in the protein sequence were annotated with interproscan (http://www.ebi.ac.uk/tools/pfa/iprscan5/) using default settings. domain architectures were visualized and arranged with domosaics v. 0.95 []. the presence of signal sequences was analyzed using singlap 4.1 []., for the detection of orthologs in both the tol and the aci set we used the targeted ortholog search tool […]

PMCID: 4494053
PMID: 26100409
DOI: 10.1093/gbe/evv091

[…] column in the trace files were greater than 100. the phylogeny is shown in supplementary figure s6, supplementary material online; domain arrangements of the respective proteins were visualized with domosaics () and projected on the phylogenetic tree., we used muscle () to create a multiple sequence alignment of all trp-n protein sequences mentioned in , except for the cnidarian ones […]


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DoMosaics institution(s)
Institute for Evolution and Biodiversity, Westphalian Wilhelms-University Münster, Münster, Germany; Max Planck Institute for Infection Biology, Berlin, Germany
DoMosaics funding source(s)
This work was supported by the DFG (Deutsche Forschungs Gemeinschaft) grant (BO 2455/4-1).

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