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Protocols

DoReMi specifications

Information


Unique identifier OMICS_30225
Name DoReMi
Alternative name Domain aided Regular Expression Mining
Interface Web user interface
Restrictions to use None
Input data The motif occurrences and one or more of the interacting domains.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Heiko Horn

Publication for Domain aided Regular Expression Mining

DoReMi citations

 (27)
library_books

Vive la radiorésistance!: converging research in radiobiology and biogerontology to enhance human radioresistance for deep space exploration and colonization

2018
Oncotarget
PMCID: 5865701
PMID: 29581875
DOI: 10.18632/oncotarget.24461

[…] iance and health risks associated with low-dose radiation exposures [] and this issue has been identified as one of the most important questions in low-dose radiobiology (EU low-dose research program DOREMI, http://cordis.europa.eu/result/rcn/183770_en.html). The SNP profile of a given individual characterizes the uniqueness of their genome. As such, individual differences in radiosensitivity with […]

library_books

Multidisciplinary European Low Dose Initiative (MELODI): strategic research agenda for low dose radiation risk research

2017
PMCID: 5816101
PMID: 29247291
DOI: 10.1007/s00411-017-0726-1

[…] ing and education. Consequently, MELODI established three working groups (WGs): one on the MELODI SRA, one on education and training, and a third on infrastructures.The European Network of Excellence DoReMi (2010–2016) funded by Euratom FP7 Radiation Protection Programme served as an important initial operational tool for establishing MELODI (Salomaa et al. ). Currently, major parts of European ra […]

library_books

Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway

2017
PLoS Comput Biol
PMCID: 5746249
PMID: 29240760
DOI: 10.1371/journal.pcbi.1005885

[…] unlikely to be functional and to prioritize motif hits for further experimental characterization. Various computational tools such as ELM, QuasiMotifFinder, MiniMotifMiner, SLiMSearch, ScanProsite or DOReMi [,–] have been developed to overcome this problem. These tools scan a defined set of proteins with a single consensus motif and utilize various discriminatory attributes to prioritize motif hit […]

library_books

HDOMO: Smart Sensor Integration for an Active and Independent Longevity of the Elderly

2017
PMCID: 5713030
PMID: 29137174
DOI: 10.3390/s17112610

[…] t of 80 billion euro from 2014 to 2020). Some of the main projects are OPPORTUNITY (http://cordis.europa.eu/project/rcn/89026_en.html), RUBICON (http://cordis.europa.eu/project/rcn/97731_en.html) and DOREMI (http://cordis.europa.eu/project/rcn/94439_en.html). […]

library_books

Telomere length, ATM mutation status and cancer risk in Ataxia Telangiectasia families

2017
PMCID: 5862273
PMID: 28981872
DOI: 10.1093/carcin/bgx074

[…] Maine et Loire, MGEN Union, ITMO Santé Publique d’AVIESAN (grant AAP12-COH-110), Institut Curie (CEST NC2013-015), Institut National du Cancer (grant INCa-9578) and the European Network of Excellence DoReMi (grant 249689). A.L.R. was the recipient of a fellowship from the Fondation ARC pour la recherche sur le cancer. […]

library_books

Ionizing Radiation Induced Immune and Inflammatory Reactions in the Brain

2017
Front Immunol
PMCID: 5418235
PMID: 28529513
DOI: 10.3389/fimmu.2017.00517

[…] This study was funded by the following grants: DoReMi FP7 project (grant agreement number: 249689), CEREBRAD FP7 project (grant agreement number: 295552), and Hungarian research grant funded by the National Research, Development and Innovation Off […]

Citations

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DoReMi institution(s)
NNF Center for Protein Research, University of Copenhagen, Denmark; Complex and Adaptive Systems Laboratory, University College Dublin, Dublin, Ireland; Conway Institute of Biomolecular and Biomedical Science, University College Dublin, Dublin, Ireland
DoReMi funding source(s)
Supported by the Novo Nordisk Foundation Center for Protein Research and by Science Foundation Ireland (Grant 08/IN.1/B1864).

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