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Dot plot creation software tools | Comparative genomics

Dot plot analysis has been widely used in bioinformatics to identify similar segments between proteins or DNA. Source text: Sit and Hu, 2015

Dotlet
Web
Desktop

Dotlet

Compares sequences by the diagonal plot method. Dotlet is designed to be an…

Compares sequences by the diagonal plot method. Dotlet is designed to be an independent platform and to run in a Web browser, thus enabling the majority of researchers to use it. Sequences can be…

Dotter
Desktop

Dotter

Analyses genomic DNA and Protein sequence. Dotter provides a tool to explore…

Analyses genomic DNA and Protein sequence. Dotter provides a tool to explore the visual appearance of this landscape, as well as a tool to examine the sequence alignment it represents. It runs linear…

dotmatcher
Web

dotmatcher

Generates a dotplot from two input sequences. The dotplot products by…

Generates a dotplot from two input sequences. The dotplot products by dotmatcher is an intuitive graphical representation of the regions of similarity between two sequences. All positions from the…

seqinr
Desktop

seqinr

Explores data analysis and data visualization for biological sequence (DNA and…

Explores data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system. It offers a vectorized…

GenomeDiff
Desktop

GenomeDiff

Compares easily virus genomes. GenomeDiff is a free, open-source software that…

Compares easily virus genomes. GenomeDiff is a free, open-source software that allows to compare virus genomes visually by dotplot. It uses alignment view and compare, for example, Hiv-1 & Visna.…

Dotplot(+)
Desktop

Dotplot(+)

Makes a dot-plot with the output file from Compare or StemLoop. Dotplot(+)…

Makes a dot-plot with the output file from Compare or StemLoop. Dotplot(+) generates dot-plots of the points of similarity between two sequences. It calculates the minimum density in bases per 100…

Gepard
Desktop

Gepard GEnome PAir - Rapid Dotter

Allows the calculation of dotplots even for large sequences like chromosomes or…

Allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes. Gepard utilizes suffix arrays for rapid heuristic dotplot calculation. For large dotplots it…

OXGRID
Dataset

OXGRID The Oxford Grid Project

Provides access to zoomable and annotated web-based Oxford grids. OXGRID is a…

Provides access to zoomable and annotated web-based Oxford grids. OXGRID is a database allowing users to browse comparative mapping data. The multiple cells view contains a grid of cells representing…

dottup
Desktop

dottup

Displays a wordmatch dotplot of two sequences. dottup looks for places where…

Displays a wordmatch dotplot of two sequences. dottup looks for places where words (tuples) of a specified length have an exact match in both sequences and draws a diagonal line over the position of…

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