Dotlet specifications

Information


Unique identifier OMICS_15826
Name Dotlet
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript
License GNU Affero General Public License version 3
Computer skills Medium
Version 1.5
Source code URL ftp://ftp.isrec.isb-sib.ch/pub/software/java/dotlet/dotlet-1.5.tar.gz
Maintained No

Download


Versioning


Add your version

Documentation


Maintainer


This tool is not maintained anymore.

Additional information


https://myhits.isb-sib.ch/util/dotlet/doc/dotlet_help.html

Information


Unique identifier OMICS_15826
Name Dotlet
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 0.1.1
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Thomas Junier <>

Additional information


https://myhits.isb-sib.ch/util/dotlet/doc/dotlet_help.html

Dotlet article

Dotlet citations

 (2)
2017
PMCID: 5737874

[…] were carefully analysed through dot plots to determine the start and end of each repeat. dot plots were also used to check for similarity between marmosat and as. these plots were generated with the dotlet application with a 15 bp word size and 60% similarity cutoff.26, multiple sequence alignments were performed using muscle 4.0.27 the mega software version 5.0528 was used for the calculation […]

2015
PMCID: 4486113

[…] 0, and the aminoacid sequence of the maize mudra transposase (genebank acc. no. aaa21566) as a query with tblastn threshold of 1e-2. mutant structure was analysed with mfold (zuker 2003) and dotlet (junier and pagni 2000). sequence logos of tirs were obtained with weblogo (crooks et al. 2004)., sequences were processed with bioedit (hall 1999). phylogenetic analyses including calculation […]

Dotlet institution(s)
Swiss Institute of Bioinformatics, Swiss Institute for Experimental Cancer Research, Epalinges, Switzerland
Dotlet funding source(s)
Supported by grant 31-49669.96 from the Swiss National Research Foundation.

Dotlet reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Dotlet

Related Tools