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Doxygen specifications


Unique identifier OMICS_14912
Name Doxygen
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C#, C++, Java, PHP
License GNU General Public License version 3.0
Computer skills Medium
Version 1.8.13
Stability Stable
Maintained No




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Doxygen citations


Real Time Processing Library for Open Source Hardware Biomedical Sensors

PMCID: 5949041
PMID: 29596394
DOI: 10.3390/s18041033

[…] algorithms. the arduino ide version 1.6.11 was used to integrate the classes with other high level libraries, and the arduino/genuino uno board for testing. to generate the documentation, we used doxygen, a free and libre software under general public license (gpl)., during this first round of testing, the program is assessed to determine whether each component of the software (function, […]


PsiQuaSP–A library for efficient computation of symmetric open quantum systems

PMCID: 5701261
PMID: 29176634
DOI: 10.1038/s41598-017-16178-8

[…] systems as well as hamiltonian diagonalizations.figure 2 , installation instructions for psiquasp and petsc are given in the and files in the psiquasp folder. psiquasp uses doxygen commenting. doxygen translates the comments in the source code into a structured website representation, which is extremely useful for getting to know the library. read doc/ […]


A supervised framework with intensity subtraction and deformation field features for the detection of new T2 w lesions in multiple sclerosis

PMCID: 5716954
PMID: 29234597
DOI: 10.1016/j.nicl.2017.11.015

[…] de tv3”, by retos de investigación tin2014-55710-r and tin2015-73563-jin, and by mpc udg 2016/022 grant.”, , , , , […]


Automating tasks in protein structure determination with the clipper python module

PMCID: 5734304
PMID: 28901669
DOI: 10.1002/pro.3299

[…] indexerror, std::length_error and std::invalid_argument to valueerror and any other std::exception to unknownerror. , as the documentation for the clipper c++ library was originally produced using doxygen (, the optimal way of producing documentation for the clipper_python module would involve channelling this information through the python help system. fortunately, […]


The EM Method in a Probabilistic Wavelet Based MRI Denoising

PMCID: 4450882
PMID: 26089959
DOI: 10.1155/2015/182659

[…] and nowak's filters use the noise estimator defined in . patch-based filter, proposed by awate-whitaker, uses gaussian and rician models (this method can be obtained at the web with the predefined parameters values except m_noisemodel = gaussian or rician and m_noisemodelfidelityweight = 0.5.), and nonlocal means filter uses […]


Finger Muscle Attachments for an OpenSim Upper Extremity Model

PMCID: 4390324
PMID: 25853869
DOI: 10.1371/journal.pone.0121712

[…] the variance accounted for (vaf) using the equation:, we implemented optimizations in matlab (2012a, mathworks, natick, ma) using the opensim application programming interface (api; opensim 2.0 doxygen) to compute moment arms., moment arms calculated using the partial velocity method fitted those measured at the mcp joint of the index finger (; ). over the entire range of motion, calculated […]

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