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Unique identifier OMICS_14912
Name Doxygen
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C#, C++, Java, PHP
License GNU General Public License version 3.0
Computer skills Medium
Version 1.8.13
Stability Stable
Maintained No
Wikipedia https://en.wikipedia.org/wiki/Doxygen

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Doxygen citations

 (18)
library_books

Real Time Processing Library for Open Source Hardware Biomedical Sensors

2018
PMCID: 5949041
PMID: 29596394
DOI: 10.3390/s18041033

[…] algorithms. the arduino ide version 1.6.11 was used to integrate the classes with other high level libraries, and the arduino/genuino uno board for testing. to generate the documentation, we used doxygen, a free and libre software under general public license (gpl)., during this first round of testing, the program is assessed to determine whether each component of the software (function, […]

library_books

PsiQuaSP–A library for efficient computation of symmetric open quantum systems

2017
PMCID: 5701261
PMID: 29176634
DOI: 10.1038/s41598-017-16178-8

[…] systems as well as hamiltonian diagonalizations.figure 2 , installation instructions for psiquasp and petsc are given in the readme.md and install.md files in the psiquasp folder. psiquasp uses doxygen commenting. doxygen translates the comments in the source code into a structured website representation, which is extremely useful for getting to know the library. read doc/readme.md […]

library_books

A supervised framework with intensity subtraction and deformation field features for the detection of new T2 w lesions in multiple sclerosis

2017
PMCID: 5716954
PMID: 29234597
DOI: 10.1016/j.nicl.2017.11.015

[…] de tv3”, by retos de investigación tin2014-55710-r and tin2015-73563-jin, and by mpc udg 2016/022 grant.”, http://www.xinapse.com/home.php , https://www.nitrc.org/projects/robex , https://itk.org/doxygen/html/classitk_1_1n4biasfieldcorrectionimagefilter.html , https://itk.org/doxygen/html/classitk_1_1histogrammatchingimagefilter.html , https://github.com/nic-vicorob/lr-t2-w-lesions […]

library_books

Automating tasks in protein structure determination with the clipper python module

2017
PMCID: 5734304
PMID: 28901669
DOI: 10.1002/pro.3299

[…] indexerror, std::length_error and std::invalid_argument to valueerror and any other std::exception to unknownerror. , as the documentation for the clipper c++ library was originally produced using doxygen (http://www.doxygen.org), the optimal way of producing documentation for the clipper_python module would involve channelling this information through the python help system. fortunately, […]

library_books

The EM Method in a Probabilistic Wavelet Based MRI Denoising

2015
PMCID: 4450882
PMID: 26089959
DOI: 10.1155/2015/182659

[…] and nowak's filters use the noise estimator defined in . patch-based filter, proposed by awate-whitaker, uses gaussian and rician models (this method can be obtained at the web http://www.itk.org/doxygen42/html/group_itkdenoising.html with the predefined parameters values except m_noisemodel = gaussian or rician and m_noisemodelfidelityweight = 0.5.), and nonlocal means filter uses […]

library_books

Finger Muscle Attachments for an OpenSim Upper Extremity Model

2015
PMCID: 4390324
PMID: 25853869
DOI: 10.1371/journal.pone.0121712

[…] the variance accounted for (vaf) using the equation:, we implemented optimizations in matlab (2012a, mathworks, natick, ma) using the opensim application programming interface (api; opensim 2.0 doxygen) to compute moment arms., moment arms calculated using the partial velocity method fitted those measured at the mcp joint of the index finger (; ). over the entire range of motion, calculated […]


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