DPDB specifications

Information


Unique identifier OMICS_03124
Name DPDB
Alternative name Drosophila Polymorphism DataBase
Restrictions to use None
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster

Maintainer


  • person_outline Sònia Casillas

Publications for Drosophila Polymorphism DataBase

DPDB citations

 (2)
library_books

MIA: Mutual Information Analyzer, a graphic user interface program that calculates entropy, vertical and horizontal mutual information of molecular sequence sets

2015
BMC Bioinformatics
PMCID: 4676106
PMID: 26652707
DOI: 10.1186/s12859-015-0837-0

[…] species data. There are some sites specialized in Drosophila data. They present sequence browsers, protein sequences, genes sequences and many parameters for molecular data. Three of these sites are: DPDB [], Flybase [] and BDGP [].In the first algorithm MIA is capable of searching for an organism, a gene or a word in the NCBI GBK. Here we searched for organism/genus “Drosophila” and the gene “Adh […]

library_books

PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences

2012
PLoS One
PMCID: 3458000
PMID: 23049971
DOI: 10.1371/journal.pone.0046180

[…] nce alignment was performed using MAFFT E-INS-i . Sequences outside the newly designed primer regions were removed from the datasets. Sliding window analysis of these datasets was performed using the Drosophila Polymorphism Database, SNP Graphics (http://dpdb.uab.es/dpdb/diversity.asp), with window length: 99 and step size: 10. During the analysis, we found some sequences with very large indels (s […]

DPDB institution(s)
Departament de Genètica i de Microbiologia, Universitat Autònoma de Barcelona, Bellaterra (Barcelona), Spain

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