DPT specifications


Unique identifier OMICS_18053
Name DPT
Alternative name Diffusion PseudoTime
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Version 0.6.0
Stability Stable
Source code URL https://www.helmholtz-muenchen.de/fileadmin/ICB/software/dpt_0.6.0.tar.gz
Maintained Yes


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  • person_outline Fabian Theis <>

Additional information

A Matlab version is also available, but is out of date and does not contain recent updates.

Publication for Diffusion PseudoTime

DPT institution(s)
Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, Germany; Department of Mathematics, Technische Universität München, Munich, Germany; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.
DPT funding source(s)
Supported by a DFG Fellowship through the Graduate School of Quantitative Biosciences Munich (QBM), the “Helmholtz Postdoc Programme”, Initiative and Networking Fund of the Helmholtz Association, the UK Medical Research Council (MRC) via a Career Development Award (Biostatistics), the German Science Foundation (SFB 1243 and Graduate School QBM) and the Bavarian government (BioSysNet).

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