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Dr.Probe specifications


Unique identifier OMICS_30051
Name Dr.Probe
Alternative name Dr. Probe
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 1.8.6
Stability Stable
Maintained Yes




No version available


  • person_outline Juri Barthel

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Publication for Dr.Probe

Dr.Probe citations


Real space analysis of diffusion behavior and activation energy of individual monatomic ions in a liquid

Sci Adv
PMCID: 5731997
PMID: 29250598
DOI: 10.1126/sciadv.1701546

[…] ADF image simulation was performed using the multislice method () with Dr. Probe high-resolution (S)TEM image simulation software. The C2mimTFSI liquid structure with a thickness of 3 nm was prepared on the basis of the aforementioned structure determined by molecular dy […]


Sulfonated reduced graphene oxide catalyzed cyclization of hydrazides and carbon dioxide to 1,3,4 oxadiazoles under sonication

Sci Rep
PMCID: 5498654
PMID: 28680037
DOI: 10.1038/s41598-017-04143-4

[…] F instrument (Japan) was used for the morphology studies and EDX spectra. For high resolution transmission electron microscope studies, HR-TEM, model JEM-2010, JEOL, Tokyo, Japan was used. 4mm CP/MAS DR probe solid state 13CNMR MAS resonance spin rate at 10 KHz was used. […]


Nanometre scale 3D defects in Cr2AlC thin films

Sci Rep
PMCID: 5430507
PMID: 28428564
DOI: 10.1038/s41598-017-01196-3

[…] stants, as shown in Fig. . In addition, a simulation of the STEM-HAADF image was carried out using the Cr2AlC supercell with the multi-slice method, as shown in Fig. . An in-house developed software (Dr. Probe) was used for the STEM image simulation. In the simulation, partial spatial coherence was considered by subsequent convolution of the effective source profile, which was set with a Lorentz d […]


Chromosomal integration of HHV 6A during non productive viral infection

Sci Rep
PMCID: 5428774
PMID: 28360414
DOI: 10.1038/s41598-017-00658-y

[…] re probe (Probe P4). HHV-6 viral DR specific probe was generated from a DR-PCR product (~3, 5 kb) amplified using 5′-AGGAACAGACAGACGGCCAC-3′ and 5′-CTCTGCGGGGATTCACGGAT-3′ primers. Similarly, the non-DR probe was generated using the following primers: 5′ATGAAATTATCCGGACTATACTGTG3′ and 5′GTTGGGAGTTAACATTTTGAAAGTG3′ that amplifies the HHV-6A IE2 ORF. […]


Electron efficiency measurements with the ATLAS detector using 2012 LHC proton–proton collision data

PMCID: 5434979
PMID: 28579919
DOI: 10.1140/epjc/s10052-017-4756-2

[…] illing ET (probe) + ET (photon) > 30 GeV. Requirements are placed on the angular distance between the photon and the electron candidates to avoid double counting of objects: ΔR (tag–photon) > 0.4 and ΔR (probe–photon) > 0.2. The reason for the asymmetry between tag and probe electron requirements is an isolation requirement with a cone size of 0.4 which is applied to the tag electron as one of the […]


Surface reconstructions and related local properties of a BiFeO3 thin film

Sci Rep
PMCID: 5244358
PMID: 28102296
DOI: 10.1038/srep39698

[…] 0 mrad for HAADF imaging. All high-resolution ABF/HAADF images shown in this work are shown as raw data without any post-filtering.Multislice ABF and HAADF STEM image simulations were performed using Dr. Probe software on the basis of atomic models relaxed by first-principles DFT calculations and using experimental imaging parameters. Considering the unique site occupation in the Bi75, Bi25 and O4 […]

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Dr.Probe institution(s)
Central Facility for Electron Microscopy, RWTH Aachen University, Aachen, Germany; Ernst Ruska-Centre, Forschungszentrum Jülich GmbH, Jülich, Germany
Dr.Probe funding source(s)
Supported by the German Science Foundation (DFG) by grant MA 1280/40-1.

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